Programming classes
  • Unix - useful commands
  • R - useful commands
  • Karen Goncalves

R classes

Title Date Description
To do before the first class Aug 1, 2023 0 R class - check before the first
R class - basics Aug 10, 2023 1st R class
R class - packages and functions Sep 1, 2023 2nd R class
Multiple sequence alignment and phylogenetic trees Jan 1, 2024 3rd R class
Get read counts Feb 16, 2024 4th R class - transcriptomics sessions
Differential expression analysis Mar 21, 2024 5th R class - transcriptomics sessions
Differential expression analysis plots Mar 23, 2024 6th R class - transcriptomics sessions
No matching items
  • Scripts from classes
  • Datasets for classes

Video on how to create an R project

  • Fall 2023 - R basics
    • Tuesdays group
      1. September 19th
      2. September 19th (2)
      3. October 3rd
      4. October 10th
      5. October 17th
    • Fridays group
      1. September 15th
      2. September 29th
      3. October 6th
      4. October 19th
  • Class1_exampleData.txt
  • TimeSeries_example.csv
  • Reductases.fasta
  • Col-0.bam file
  • Col-0.bam.bai file
  • Arabidopsis_counts.csv

Unix classes

Title Date Description
Unix basic commands Jan 26, 2023 1st unix class
Connecting to a server Jan 26, 2023 2nd unix class
Running Jobs Jan 30, 2023 3rd unix class
AWK command Feb 13, 2023 5th unix class
Running blast on the server Mar 6, 2023 4th unix class
SED command Apr 4, 2023 6th unix class
No matching items
  • Scripts for class
  • Datasets for class
  • Scripts for the class 4:
    • myTry.sh
    • myGeneralBlast.sh
    • sbatch_blast.sh
    • create_master_blast.sh
  • prots.fasta
  • blastn_result.txt
  • input_subset.fasta
Back to top
 

Copyright 2023, Ph.D. Karen Cristine Goncalves