installed.packages() Package
abind "abind"
ade4 "ade4"
adegenet "adegenet"
adegraphics "adegraphics"
adephylo "adephylo"
adespatial "adespatial"
admisc "admisc"
affy "affy"
affyio "affyio"
annotate "annotate"
AnnotationDbi "AnnotationDbi"
ape "ape"
aplot "aplot"
ash "ash"
AsioHeaders "AsioHeaders"
askpass "askpass"
assertthat "assertthat"
backports "backports"
base64enc "base64enc"
BH "BH"
bigassertr "bigassertr"
bigparallelr "bigparallelr"
bigstatsr "bigstatsr"
Biobase "Biobase"
BiocFileCache "BiocFileCache"
BiocGenerics "BiocGenerics"
BiocIO "BiocIO"
BiocManager "BiocManager"
BiocParallel "BiocParallel"
BiocStyle "BiocStyle"
BiocVersion "BiocVersion"
biomaRt "biomaRt"
biostat "biostat"
Biostrings "Biostrings"
bit "bit"
bit64 "bit64"
bitops "bitops"
bladderbatch "bladderbatch"
blob "blob"
bookdown "bookdown"
boot "boot"
brew "brew"
brio "brio"
broom "broom"
bslib "bslib"
cachem "cachem"
Cairo "Cairo"
callr "callr"
car "car"
carData "carData"
caret "caret"
caTools "caTools"
cellranger "cellranger"
checkmate "checkmate"
classInt "classInt"
cli "cli"
clipr "clipr"
clock "clock"
clue "clue"
cluster "cluster"
clusterProfiler "clusterProfiler"
codetools "codetools"
coin "coin"
collections "collections"
colorspace "colorspace"
colourpicker "colourpicker"
commonmark "commonmark"
conflicted "conflicted"
contrast "contrast"
corpcor "corpcor"
corrplot "corrplot"
covr "covr"
cowplot "cowplot"
cpp11 "cpp11"
crayon "crayon"
credentials "credentials"
crmn "crmn"
crosstalk "crosstalk"
crul "crul"
curl "curl"
CustomSelection "CustomSelection"
cyclocomp "cyclocomp"
data.table "data.table"
data.tree "data.tree"
DBI "DBI"
dbplyr "dbplyr"
DelayedArray "DelayedArray"
deldir "deldir"
dendextend "dendextend"
Deriv "Deriv"
desc "desc"
DescTools "DescTools"
DESeq2 "DESeq2"
devtools "devtools"
diagram "diagram"
diffobj "diffobj"
digest "digest"
doBy "doBy"
doParallel "doParallel"
DOSE "DOSE"
downlit "downlit"
downloader "downloader"
dplyr "dplyr"
dslabs "dslabs"
DT "DT"
dtplyr "dtplyr"
dunn.test "dunn.test"
e1071 "e1071"
earth "earth"
edgeR "edgeR"
ellipse "ellipse"
ellipsis "ellipsis"
embroidr "embroidr"
emmeans "emmeans"
enrichplot "enrichplot"
entropy "entropy"
estimability "estimability"
evaluate "evaluate"
Exact "Exact"
expm "expm"
expsmooth "expsmooth"
extrafont "extrafont"
extrafontdb "extrafontdb"
fansi "fansi"
farver "farver"
fastmap "fastmap"
fastmatch "fastmatch"
feather "feather"
ff "ff"
fgsea "fgsea"
filelock "filelock"
fitdistrplus "fitdistrplus"
flock "flock"
fma "fma"
fontawesome "fontawesome"
forcats "forcats"
foreach "foreach"
forecast "forecast"
forestplot "forestplot"
formatR "formatR"
Formula "Formula"
fpp2 "fpp2"
fracdiff "fracdiff"
fs "fs"
FSA "FSA"
furrr "furrr"
futile.logger "futile.logger"
futile.options "futile.options"
future "future"
future.apply "future.apply"
gapminder "gapminder"
gargle "gargle"
gaston "gaston"
gee "gee"
geepack "geepack"
genefilter "genefilter"
genepop "genepop"
generics "generics"
GenomeInfoDb "GenomeInfoDb"
GenomeInfoDbData "GenomeInfoDbData"
GenomicAlignments "GenomicAlignments"
GenomicFeatures "GenomicFeatures"
GenomicRanges "GenomicRanges"
genstats "genstats"
geodata "geodata"
gert "gert"
GetoptLong "GetoptLong"
ggalt "ggalt"
ggExtra "ggExtra"
ggforce "ggforce"
ggfortify "ggfortify"
ggfun "ggfun"
ggmsa "ggmsa"
ggnewscale "ggnewscale"
ggplot2 "ggplot2"
ggplotify "ggplotify"
ggpolypath "ggpolypath"
ggpubr "ggpubr"
ggraph "ggraph"
ggrepel "ggrepel"
ggsci "ggsci"
ggsignif "ggsignif"
ggspatial "ggspatial"
ggtext "ggtext"
ggtranscript "ggtranscript"
ggtree "ggtree"
ggvenn "ggvenn"
gh "gh"
gitcreds "gitcreds"
glasso "glasso"
gld "gld"
GlobalAncova "GlobalAncova"
GlobalOptions "GlobalOptions"
globals "globals"
globaltest "globaltest"
glue "glue"
Gmisc "Gmisc"
GO.db "GO.db"
googledrive "googledrive"
googlesheets4 "googlesheets4"
GOSemSim "GOSemSim"
gower "gower"
GPArotation "GPArotation"
gplots "gplots"
graph "graph"
graphlayouts "graphlayouts"
gridBase "gridBase"
gridExtra "gridExtra"
gridGraphics "gridGraphics"
gridtext "gridtext"
GSEABase "GSEABase"
gson "gson"
gtable "gtable"
gtools "gtools"
hardhat "hardhat"
haven "haven"
HDO.db "HDO.db"
hierfstat "hierfstat"
highr "highr"
HistData "HistData"
Hmisc "Hmisc"
hms "hms"
hoardr "hoardr"
htmlTable "htmlTable"
htmltools "htmltools"
htmlwidgets "htmlwidgets"
httpcode "httpcode"
httpuv "httpuv"
httr "httr"
httr2 "httr2"
ids "ids"
igraph "igraph"
impute "impute"
ini "ini"
interp "interp"
ipred "ipred"
IRanges "IRanges"
isoband "isoband"
iterators "iterators"
jpeg "jpeg"
jquerylib "jquerylib"
jsonlite "jsonlite"
kableExtra "kableExtra"
KEGGgraph "KEGGgraph"
KEGGREST "KEGGREST"
KernSmooth "KernSmooth"
knitr "knitr"
labeling "labeling"
lambda.r "lambda.r"
languageserver "languageserver"
later "later"
lattice "lattice"
latticeExtra "latticeExtra"
lava "lava"
lazyeval "lazyeval"
libcoin "libcoin"
lifecycle "lifecycle"
limma "limma"
lintr "lintr"
listenv "listenv"
lme4 "lme4"
lmom "lmom"
lmtest "lmtest"
locfit "locfit"
lsmeans "lsmeans"
lubridate "lubridate"
magrittr "magrittr"
MALDIquant "MALDIquant"
maps "maps"
markdown "markdown"
MatrixGenerics "MatrixGenerics"
MatrixModels "MatrixModels"
matrixStats "matrixStats"
mclust "mclust"
memoise "memoise"
memuse "memuse"
MetaboAnalystR "MetaboAnalystR"
microbenchmark "microbenchmark"
mime "mime"
miniUI "miniUI"
minpack.lm "minpack.lm"
minqa "minqa"
mmod "mmod"
mnormt "mnormt"
mockr "mockr"
ModelMetrics "ModelMetrics"
modelr "modelr"
modeltools "modeltools"
msa "msa"
MsCoreUtils "MsCoreUtils"
MSnbase "MSnbase"
mtbls2 "mtbls2"
multcomp "multcomp"
multcompView "multcompView"
multtest "multtest"
munsell "munsell"
mvtnorm "mvtnorm"
mzID "mzID"
mzR "mzR"
natserv "natserv"
ncdf4 "ncdf4"
networkD3 "networkD3"
nloptr "nloptr"
nortest "nortest"
numDeriv "numDeriv"
onekp "onekp"
openssl "openssl"
openxlsx "openxlsx"
OptiLCMS "OptiLCMS"
pagedown "pagedown"
pander "pander"
pandoc "pandoc"
parallelly "parallelly"
patchwork "patchwork"
pbapply "pbapply"
pbkrtest "pbkrtest"
pcaMethods "pcaMethods"
pegas "pegas"
permute "permute"
phangorn "phangorn"
phylobase "phylobase"
pillar "pillar"
pinfsc50 "pinfsc50"
pixmap "pixmap"
pkgbuild "pkgbuild"
pkgconfig "pkgconfig"
pkgdown "pkgdown"
pkgload "pkgload"
plogr "plogr"
plotly "plotly"
plotmo "plotmo"
plotrix "plotrix"
pls "pls"
plyr "plyr"
png "png"
polspline "polspline"
polyclip "polyclip"
polynom "polynom"
polysat "polysat"
PopGenHelpR "PopGenHelpR"
poppr "poppr"
posterdown "posterdown"
poweRlaw "poweRlaw"
pracma "pracma"
praise "praise"
preprocessCore "preprocessCore"
prettyunits "prettyunits"
pROC "pROC"
processx "processx"
prodlim "prodlim"
profvis "profvis"
progress "progress"
progressr "progressr"
proj4 "proj4"
promises "promises"
ProtGenerics "ProtGenerics"
proxy "proxy"
ps "ps"
psych "psych"
purrr "purrr"
qs "qs"
quadprog "quadprog"
quantmod "quantmod"
quantreg "quantreg"
qvalue "qvalue"
R.cache "R.cache"
R.methodsS3 "R.methodsS3"
R.oo "R.oo"
R.utils "R.utils"
R4RNA "R4RNA"
R6 "R6"
rafalib "rafalib"
ragg "ragg"
randomForest "randomForest"
RApiSerialize "RApiSerialize"
rappdirs "rappdirs"
ratelimitr "ratelimitr"
RBGL "RBGL"
rbibutils "rbibutils"
rcmdcheck "rcmdcheck"
RColorBrewer "RColorBrewer"
rcompanion "rcompanion"
Rcpp "Rcpp"
RcppArmadillo "RcppArmadillo"
RcppEigen "RcppEigen"
RcppParallel "RcppParallel"
RcppProgress "RcppProgress"
RCurl "RCurl"
Rdpack "Rdpack"
readr "readr"
readxl "readxl"
recipes "recipes"
reformulas "reformulas"
rematch "rematch"
rematch2 "rematch2"
remotes "remotes"
rentrez "rentrez"
renv "renv"
reprex "reprex"
reshape2 "reshape2"
restfulr "restfulr"
rex "rex"
rgl "rgl"
Rgraphviz "Rgraphviz"
Rhdf5lib "Rhdf5lib"
RhpcBLASctl "RhpcBLASctl"
Rhtslib "Rhtslib"
ritis "ritis"
rjson "rjson"
RJSONIO "RJSONIO"
rlang "rlang"
rmarkdown "rmarkdown"
rmio "rmio"
rms "rms"
rncl "rncl"
RNeXML "RNeXML"
rootSolve "rootSolve"
rosm "rosm"
rotl "rotl"
roxygen2 "roxygen2"
rprojroot "rprojroot"
rredlist "rredlist"
Rsamtools "Rsamtools"
Rserve "Rserve"
RSkittleBrewer "RSkittleBrewer"
rsm "rsm"
RSpectra "RSpectra"
RSQLite "RSQLite"
rstatix "rstatix"
rstudioapi "rstudioapi"
rtracklayer "rtracklayer"
Rttf2pt1 "Rttf2pt1"
rversions "rversions"
rvest "rvest"
s2 "s2"
S4Arrays "S4Arrays"
S4Vectors "S4Vectors"
sandwich "sandwich"
sass "sass"
scales "scales"
scatterpie "scatterpie"
scrime "scrime"
scriptName "scriptName"
segmented "segmented"
selectr "selectr"
seqinr "seqinr"
seqmagick "seqmagick"
servr "servr"
sessioninfo "sessioninfo"
sf "sf"
shadowtext "shadowtext"
shape "shape"
shiny "shiny"
shinyjs "shinyjs"
shinythemes "shinythemes"
siggenes "siggenes"
snow "snow"
snpStats "snpStats"
solrium "solrium"
sourcetools "sourcetools"
sp "sp"
SparseArray "SparseArray"
SparseM "SparseM"
spData "spData"
spdep "spdep"
splancs "splancs"
SQUAREM "SQUAREM"
SSPA "SSPA"
statebins "statebins"
statmod "statmod"
stringfish "stringfish"
stringi "stringi"
stringr "stringr"
styler "styler"
SummarizedExperiment "SummarizedExperiment"
SuppDists "SuppDists"
survival "survival"
sva "sva"
svglite "svglite"
swirl "swirl"
sys "sys"
systemfonts "systemfonts"
taxize "taxize"
taxizedb "taxizedb"
terra "terra"
testthat "testthat"
textshaping "textshaping"
TH.data "TH.data"
tibble "tibble"
tidygraph "tidygraph"
tidyr "tidyr"
tidyselect "tidyselect"
tidytree "tidytree"
tidyverse "tidyverse"
timechange "timechange"
timeDate "timeDate"
tinytex "tinytex"
treeio "treeio"
treemap "treemap"
triebeard "triebeard"
tseries "tseries"
TTR "TTR"
tweenr "tweenr"
tzdb "tzdb"
units "units"
urca "urca"
urlchecker "urlchecker"
urltools "urltools"
usethis "usethis"
UsingR "UsingR"
utf8 "utf8"
uuid "uuid"
vcfR "vcfR"
vctrs "vctrs"
vegan "vegan"
venn "venn"
VennDiagram "VennDiagram"
VGAM "VGAM"
viridis "viridis"
viridisLite "viridisLite"
vroom "vroom"
vsn "vsn"
waldo "waldo"
webchem "webchem"
websocket "websocket"
whisker "whisker"
WikidataQueryServiceR "WikidataQueryServiceR"
WikidataR "WikidataR"
WikipediR "WikipediR"
wikitaxa "wikitaxa"
withr "withr"
wk "wk"
worrms "worrms"
xfun "xfun"
XML "XML"
xml2 "xml2"
xmlparsedata "xmlparsedata"
xopen "xopen"
xtable "xtable"
xts "xts"
XVector "XVector"
yaml "yaml"
yulab.utils "yulab.utils"
zip "zip"
zlibbioc "zlibbioc"
zoo "zoo"
base "base"
boot "boot"
class "class"
cluster "cluster"
codetools "codetools"
compiler "compiler"
datasets "datasets"
foreign "foreign"
graphics "graphics"
grDevices "grDevices"
grid "grid"
KernSmooth "KernSmooth"
lattice "lattice"
MASS "MASS"
Matrix "Matrix"
methods "methods"
mgcv "mgcv"
nlme "nlme"
nnet "nnet"
parallel "parallel"
rpart "rpart"
spatial "spatial"
splines "splines"
stats "stats"
stats4 "stats4"
survival "survival"
tcltk "tcltk"
tools "tools"
translations "translations"
utils "utils"
LibPath
abind "C:/Users/karen/AppData/Local/R/win-library/4.3"
ade4 "C:/Users/karen/AppData/Local/R/win-library/4.3"
adegenet "C:/Users/karen/AppData/Local/R/win-library/4.3"
adegraphics "C:/Users/karen/AppData/Local/R/win-library/4.3"
adephylo "C:/Users/karen/AppData/Local/R/win-library/4.3"
adespatial "C:/Users/karen/AppData/Local/R/win-library/4.3"
admisc "C:/Users/karen/AppData/Local/R/win-library/4.3"
affy "C:/Users/karen/AppData/Local/R/win-library/4.3"
affyio "C:/Users/karen/AppData/Local/R/win-library/4.3"
annotate "C:/Users/karen/AppData/Local/R/win-library/4.3"
AnnotationDbi "C:/Users/karen/AppData/Local/R/win-library/4.3"
ape "C:/Users/karen/AppData/Local/R/win-library/4.3"
aplot "C:/Users/karen/AppData/Local/R/win-library/4.3"
ash "C:/Users/karen/AppData/Local/R/win-library/4.3"
AsioHeaders "C:/Users/karen/AppData/Local/R/win-library/4.3"
askpass "C:/Users/karen/AppData/Local/R/win-library/4.3"
assertthat "C:/Users/karen/AppData/Local/R/win-library/4.3"
backports "C:/Users/karen/AppData/Local/R/win-library/4.3"
base64enc "C:/Users/karen/AppData/Local/R/win-library/4.3"
BH "C:/Users/karen/AppData/Local/R/win-library/4.3"
bigassertr "C:/Users/karen/AppData/Local/R/win-library/4.3"
bigparallelr "C:/Users/karen/AppData/Local/R/win-library/4.3"
bigstatsr "C:/Users/karen/AppData/Local/R/win-library/4.3"
Biobase "C:/Users/karen/AppData/Local/R/win-library/4.3"
BiocFileCache "C:/Users/karen/AppData/Local/R/win-library/4.3"
BiocGenerics "C:/Users/karen/AppData/Local/R/win-library/4.3"
BiocIO "C:/Users/karen/AppData/Local/R/win-library/4.3"
BiocManager "C:/Users/karen/AppData/Local/R/win-library/4.3"
BiocParallel "C:/Users/karen/AppData/Local/R/win-library/4.3"
BiocStyle "C:/Users/karen/AppData/Local/R/win-library/4.3"
BiocVersion "C:/Users/karen/AppData/Local/R/win-library/4.3"
biomaRt "C:/Users/karen/AppData/Local/R/win-library/4.3"
biostat "C:/Users/karen/AppData/Local/R/win-library/4.3"
Biostrings "C:/Users/karen/AppData/Local/R/win-library/4.3"
bit "C:/Users/karen/AppData/Local/R/win-library/4.3"
bit64 "C:/Users/karen/AppData/Local/R/win-library/4.3"
bitops "C:/Users/karen/AppData/Local/R/win-library/4.3"
bladderbatch "C:/Users/karen/AppData/Local/R/win-library/4.3"
blob "C:/Users/karen/AppData/Local/R/win-library/4.3"
bookdown "C:/Users/karen/AppData/Local/R/win-library/4.3"
boot "C:/Users/karen/AppData/Local/R/win-library/4.3"
brew "C:/Users/karen/AppData/Local/R/win-library/4.3"
brio "C:/Users/karen/AppData/Local/R/win-library/4.3"
broom "C:/Users/karen/AppData/Local/R/win-library/4.3"
bslib "C:/Users/karen/AppData/Local/R/win-library/4.3"
cachem "C:/Users/karen/AppData/Local/R/win-library/4.3"
Cairo "C:/Users/karen/AppData/Local/R/win-library/4.3"
callr "C:/Users/karen/AppData/Local/R/win-library/4.3"
car "C:/Users/karen/AppData/Local/R/win-library/4.3"
carData "C:/Users/karen/AppData/Local/R/win-library/4.3"
caret "C:/Users/karen/AppData/Local/R/win-library/4.3"
caTools "C:/Users/karen/AppData/Local/R/win-library/4.3"
cellranger "C:/Users/karen/AppData/Local/R/win-library/4.3"
checkmate "C:/Users/karen/AppData/Local/R/win-library/4.3"
classInt "C:/Users/karen/AppData/Local/R/win-library/4.3"
cli "C:/Users/karen/AppData/Local/R/win-library/4.3"
clipr "C:/Users/karen/AppData/Local/R/win-library/4.3"
clock "C:/Users/karen/AppData/Local/R/win-library/4.3"
clue "C:/Users/karen/AppData/Local/R/win-library/4.3"
cluster "C:/Users/karen/AppData/Local/R/win-library/4.3"
clusterProfiler "C:/Users/karen/AppData/Local/R/win-library/4.3"
codetools "C:/Users/karen/AppData/Local/R/win-library/4.3"
coin "C:/Users/karen/AppData/Local/R/win-library/4.3"
collections "C:/Users/karen/AppData/Local/R/win-library/4.3"
colorspace "C:/Users/karen/AppData/Local/R/win-library/4.3"
colourpicker "C:/Users/karen/AppData/Local/R/win-library/4.3"
commonmark "C:/Users/karen/AppData/Local/R/win-library/4.3"
conflicted "C:/Users/karen/AppData/Local/R/win-library/4.3"
contrast "C:/Users/karen/AppData/Local/R/win-library/4.3"
corpcor "C:/Users/karen/AppData/Local/R/win-library/4.3"
corrplot "C:/Users/karen/AppData/Local/R/win-library/4.3"
covr "C:/Users/karen/AppData/Local/R/win-library/4.3"
cowplot "C:/Users/karen/AppData/Local/R/win-library/4.3"
cpp11 "C:/Users/karen/AppData/Local/R/win-library/4.3"
crayon "C:/Users/karen/AppData/Local/R/win-library/4.3"
credentials "C:/Users/karen/AppData/Local/R/win-library/4.3"
crmn "C:/Users/karen/AppData/Local/R/win-library/4.3"
crosstalk "C:/Users/karen/AppData/Local/R/win-library/4.3"
crul "C:/Users/karen/AppData/Local/R/win-library/4.3"
curl "C:/Users/karen/AppData/Local/R/win-library/4.3"
CustomSelection "C:/Users/karen/AppData/Local/R/win-library/4.3"
cyclocomp "C:/Users/karen/AppData/Local/R/win-library/4.3"
data.table "C:/Users/karen/AppData/Local/R/win-library/4.3"
data.tree "C:/Users/karen/AppData/Local/R/win-library/4.3"
DBI "C:/Users/karen/AppData/Local/R/win-library/4.3"
dbplyr "C:/Users/karen/AppData/Local/R/win-library/4.3"
DelayedArray "C:/Users/karen/AppData/Local/R/win-library/4.3"
deldir "C:/Users/karen/AppData/Local/R/win-library/4.3"
dendextend "C:/Users/karen/AppData/Local/R/win-library/4.3"
Deriv "C:/Users/karen/AppData/Local/R/win-library/4.3"
desc "C:/Users/karen/AppData/Local/R/win-library/4.3"
DescTools "C:/Users/karen/AppData/Local/R/win-library/4.3"
DESeq2 "C:/Users/karen/AppData/Local/R/win-library/4.3"
devtools "C:/Users/karen/AppData/Local/R/win-library/4.3"
diagram "C:/Users/karen/AppData/Local/R/win-library/4.3"
diffobj "C:/Users/karen/AppData/Local/R/win-library/4.3"
digest "C:/Users/karen/AppData/Local/R/win-library/4.3"
doBy "C:/Users/karen/AppData/Local/R/win-library/4.3"
doParallel "C:/Users/karen/AppData/Local/R/win-library/4.3"
DOSE "C:/Users/karen/AppData/Local/R/win-library/4.3"
downlit "C:/Users/karen/AppData/Local/R/win-library/4.3"
downloader "C:/Users/karen/AppData/Local/R/win-library/4.3"
dplyr "C:/Users/karen/AppData/Local/R/win-library/4.3"
dslabs "C:/Users/karen/AppData/Local/R/win-library/4.3"
DT "C:/Users/karen/AppData/Local/R/win-library/4.3"
dtplyr "C:/Users/karen/AppData/Local/R/win-library/4.3"
dunn.test "C:/Users/karen/AppData/Local/R/win-library/4.3"
e1071 "C:/Users/karen/AppData/Local/R/win-library/4.3"
earth "C:/Users/karen/AppData/Local/R/win-library/4.3"
edgeR "C:/Users/karen/AppData/Local/R/win-library/4.3"
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ggnewscale NA
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ggspatial "R (>= 2.10)"
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ggvenn "dplyr, grid, ggplot2"
gh "R (>= 3.6)"
gitcreds "R (>= 3.4)"
glasso NA
gld NA
GlobalAncova "methods, corpcor, globaltest"
GlobalOptions "R (>= 3.3.0), methods"
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glue "R (>= 3.6)"
Gmisc "R (>= 4.1.0), Rcpp (>= 0.11.4), htmlTable (>= 2.0.0)"
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googledrive "R (>= 3.6)"
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gower NA
GPArotation "R (>= 2.0.0)"
gplots "R (>= 3.0)"
graph "R (>= 2.10), methods, BiocGenerics (>= 0.13.11)"
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gridBase "R (>= 2.3.0)"
gridExtra NA
gridGraphics "grid, graphics"
gridtext "R (>= 3.5)"
GSEABase "R (>= 2.6.0), BiocGenerics (>= 0.13.8), Biobase (>= 2.17.8),\nannotate (>= 1.45.3), methods, graph (>= 1.37.2)"
gson NA
gtable "R (>= 4.0)"
gtools "methods, stats, utils"
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HDO.db "R (>= 4.2.0)"
hierfstat "R (>= 2.10)"
highr "R (>= 3.3.0)"
HistData "R (>= 4.1.0)"
Hmisc "R (>= 4.2.0)"
hms NA
hoardr NA
htmlTable "R (>= 4.1)"
htmltools "R (>= 2.14.1)"
htmlwidgets NA
httpcode NA
httpuv "R (>= 2.15.1)"
httr "R (>= 3.5)"
httr2 "R (>= 4.0)"
ids NA
igraph "methods, R (>= 3.5.0)"
impute "R (>= 2.10)"
ini NA
interp "R (>= 3.5.0)"
ipred "R (>= 2.10)"
IRanges "R (>= 4.0.0), methods, utils, stats, BiocGenerics (>= 0.39.2),\nS4Vectors (>= 0.33.3)"
isoband NA
iterators "R (>= 2.5.0), utils"
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jquerylib NA
jsonlite "methods"
kableExtra "R (>= 3.1.0)"
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lmtest "R (>= 3.0.0), stats, zoo"
locfit "R (>= 4.1.0)"
lsmeans "emmeans (>= 1.3), methods, R (>= 3.2)"
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MatrixGenerics "matrixStats (>= 1.0.0)"
MatrixModels "R (>= 3.6.0)"
matrixStats "R (>= 3.4.0)"
mclust "R (>= 3.0)"
memoise NA
memuse "R (>= 3.0.0)"
MetaboAnalystR "R (>= 4.0), methods"
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mime NA
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minpack.lm NA
minqa NA
mmod "R (>= 2.6.0), adegenet (>= 2.0),"
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mockr NA
ModelMetrics "R (>= 3.2.2)"
modelr "R (>= 3.2)"
modeltools "stats, stats4"
msa "R (>= 3.3.0), methods, Biostrings (>= 2.40.0)"
MsCoreUtils "R (>= 3.6.0)"
MSnbase "R (>= 3.5), methods, BiocGenerics (>= 0.7.1), Biobase (>=\n2.15.2), mzR (>= 2.29.3), S4Vectors, ProtGenerics (>= 1.29.1)"
mtbls2 "R (>= 2.10)"
multcomp "stats, graphics, mvtnorm (>= 1.0-10), survival (>= 2.39-4),\nTH.data (>= 1.0-2)"
multcompView NA
multtest "R (>= 2.10), methods, BiocGenerics, Biobase"
munsell NA
mvtnorm "R(>= 3.5.0)"
mzID "methods"
mzR "R (>= 4.0.0), Rcpp (>= 0.10.1), methods, utils"
natserv "R(>= 3.2.1)"
ncdf4 NA
networkD3 "R (>= 3.0.0)"
nloptr NA
nortest NA
numDeriv "R (>= 2.11.1)"
onekp "R (>= 3.4.0)"
openssl NA
openxlsx "R (>= 3.3.0)"
OptiLCMS "R (>= 4.0.0), methods, Biobase, BiocParallel (>= 1.8.0),\nstats, utils, MSnbase"
pagedown "R (>= 3.5.0)"
pander "R (>= 2.15.0)"
pandoc "R (>= 3.5.0)"
parallelly NA
patchwork NA
pbapply "R (>= 3.2.0)"
pbkrtest "R (>= 4.2.0), lme4 (>= 1.1.31)"
pcaMethods "Biobase, methods"
pegas "R (>= 3.2.0), ape (>= 5.3-11)"
permute "R (>= 3.6.0)"
phangorn "ape (>= 5.8), R (>= 4.1.0)"
phylobase NA
pillar NA
pinfsc50 "R (>= 3.2.1)"
pixmap NA
pkgbuild "R (>= 3.5)"
pkgconfig NA
pkgdown "R (>= 4.0.0)"
pkgload "R (>= 3.4.0)"
plogr NA
plotly "R (>= 3.2.0), ggplot2 (>= 3.0.0)"
plotmo "R (>= 3.4.0), Formula (>= 1.2-3), plotrix"
plotrix "R (>= 3.5.0)"
pls "R (>= 3.5.0)"
plyr "R (>= 3.1.0)"
png "R (>= 2.9.0)"
polspline NA
polyclip "R (>= 3.5.0)"
polynom NA
polysat NA
PopGenHelpR "R (>= 2.10)"
poppr "R (>= 2.15.1), adegenet (>= 2.0.0)"
posterdown NA
poweRlaw "R (>= 3.4.0)"
pracma "R (>= 3.1.0)"
praise NA
preprocessCore NA
prettyunits "R(>= 2.10)"
pROC "R (>= 2.14)"
processx "R (>= 3.4.0)"
prodlim "R (>= 2.9.0)"
profvis "R (>= 4.0)"
progress "R (>= 3.6)"
progressr "R (>= 3.5.0)"
proj4 "R (>= 2.0.0)"
promises NA
ProtGenerics "methods"
proxy "R (>= 3.4.0)"
ps "R (>= 3.4)"
psych NA
purrr "R (>= 3.5.0)"
qs "R (>= 3.0.2)"
quadprog "R (>= 3.1.0)"
quantmod "R (>= 3.2.0), xts(>= 0.9-0), zoo, TTR(>= 0.2), methods"
quantreg "R (>= 3.5), stats, SparseM"
qvalue "R(>= 2.10)"
R.cache "R (>= 2.14.0)"
R.methodsS3 "R (>= 2.13.0)"
R.oo "R (>= 2.13.0), R.methodsS3 (>= 1.8.2)"
R.utils "R (>= 2.14.0), R.oo"
R4RNA "R (>= 3.2.0), Biostrings (>= 2.38.0)"
R6 "R (>= 3.6)"
rafalib "R (>= 3.1.2),"
ragg NA
randomForest "R (>= 4.1.0), stats"
RApiSerialize NA
rappdirs "R (>= 3.2)"
ratelimitr NA
RBGL "graph, methods"
rbibutils "R (>= 2.10)"
rcmdcheck NA
RColorBrewer "R (>= 2.0.0)"
rcompanion "R (>= 4.1.0)"
Rcpp NA
RcppArmadillo "R (>= 3.3.0)"
RcppEigen "R (>= 3.6.0)"
RcppParallel "R (>= 3.0.2)"
RcppProgress NA
RCurl "R (>= 3.4.0), methods"
Rdpack "R (>= 2.15.0), methods"
readr "R (>= 3.6)"
readxl "R (>= 3.6)"
recipes "dplyr (>= 1.1.0), R (>= 3.6)"
reformulas NA
rematch NA
rematch2 NA
remotes "R (>= 3.0.0)"
rentrez "R (>= 2.6.0)"
renv NA
reprex "R (>= 3.6)"
reshape2 "R (>= 3.1)"
restfulr "R (>= 3.4.0), methods"
rex NA
rgl "R (>= 3.6.0)"
Rgraphviz "R (>= 2.6.0), methods, utils, graph, grid"
Rhdf5lib "R (>= 4.2.0)"
RhpcBLASctl NA
Rhtslib NA
ritis NA
rjson "R (>= 4.0.0)"
RJSONIO NA
rlang "R (>= 3.5.0)"
rmarkdown "R (>= 3.0)"
rmio NA
rms "R (>= 3.5.0), Hmisc (>= 4.8-0)"
rncl "R (>= 3.1.1)"
RNeXML "R (>= 3.0.0), ape (>= 3.1), methods (>= 3.0.0)"
rootSolve "R (>= 2.01)"
rosm NA
rotl "R (>= 3.1.1)"
roxygen2 "R (>= 3.6)"
rprojroot "R (>= 3.0.0)"
rredlist NA
Rsamtools "methods, GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.31.8),\nBiostrings (>= 2.47.6), R (>= 3.5.0)"
Rserve "R (>= 1.5.0)"
RSkittleBrewer NA
rsm NA
RSpectra "R (>= 3.0.2)"
RSQLite "R (>= 3.1.0)"
rstatix "R (>= 3.3.0)"
rstudioapi NA
rtracklayer "R (>= 3.5.0), methods, GenomicRanges (>= 1.37.2)"
Rttf2pt1 "R (>= 2.15)"
rversions NA
rvest "R (>= 3.6)"
s2 "R (>= 3.0.0)"
S4Arrays "R (>= 4.3.0), methods, Matrix, abind, BiocGenerics (>=\n0.45.2), S4Vectors, IRanges"
S4Vectors "R (>= 4.0.0), methods, utils, stats, stats4, BiocGenerics (>=\n0.37.0)"
sandwich "R (>= 3.0.0)"
sass NA
scales "R (>= 4.1)"
scatterpie "R (>= 4.1.0), ggplot2"
scrime NA
scriptName NA
segmented "R (>= 3.5.0), MASS, nlme"
selectr "R (>= 3.0)"
seqinr "R (>= 2.10.0)"
seqmagick "R (>= 3.6.0)"
servr "R (>= 3.0.0)"
sessioninfo "R (>= 2.10)"
sf "methods, R (>= 3.3.0)"
shadowtext "R (>= 3.4.0)"
shape "R (>= 2.01)"
shiny "R (>= 3.0.2), methods"
shinyjs "R (>= 3.1.0)"
shinythemes "R (>= 3.0.0)"
siggenes "Biobase, multtest, splines, methods"
snow "R (>= 2.13.1), utils"
snpStats "R(>= 2.10.0), survival, Matrix, methods"
solrium NA
sourcetools "R (>= 3.0.2)"
sp "R (>= 3.5.0), methods"
SparseArray "R (>= 4.3.0), methods, Matrix, BiocGenerics (>= 0.43.1),\nMatrixGenerics (>= 1.11.1), S4Vectors, S4Arrays (>= 1.1.6)"
SparseM "R (>= 2.15), methods"
spData "R (>= 3.3.0)"
spdep "R (>= 3.3.0), methods, spData (>= 2.3.1), sf"
splancs "R (>= 2.10.0), sp (>= 0.9)"
SQUAREM "R (>= 3.0)"
SSPA "R (>= 2.12), methods"
statebins "R (>= 3.5.0),"
statmod "R (>= 3.0.0)"
stringfish "R (>= 3.0.2)"
stringi "R (>= 3.4)"
stringr "R (>= 3.6)"
styler "R (>= 3.6.0)"
SummarizedExperiment "R (>= 4.0.0), methods, MatrixGenerics (>= 1.1.3),\nGenomicRanges (>= 1.41.5), Biobase"
SuppDists "R (>= 3.3.0)"
survival "R (>= 3.5.0)"
sva "R (>= 3.2), mgcv, genefilter, BiocParallel"
svglite "R (>= 3.5.0)"
swirl "R (>= 3.1.0)"
sys NA
systemfonts "R (>= 3.2.0)"
taxize "R(>= 3.2.1)"
taxizedb NA
terra "R (>= 3.5.0)"
testthat "R (>= 3.6.0)"
textshaping "R (>= 3.2.0)"
TH.data "R (>= 3.5.0), survival, MASS"
tibble "R (>= 3.4.0)"
tidygraph NA
tidyr "R (>= 3.6)"
tidyselect "R (>= 3.4)"
tidytree "R (>= 3.4.0)"
tidyverse "R (>= 3.3)"
timechange "R (>= 3.3)"
timeDate "R (>= 3.6.0), methods"
tinytex NA
treeio "R (>= 3.6.0)"
treemap "R (>= 2.10)"
triebeard NA
tseries "R (>= 3.4.0)"
TTR NA
tweenr "R (>= 3.2.0)"
tzdb "R (>= 3.5.0)"
units "R (>= 3.0.2)"
urca "R (>= 2.0.0), methods"
urlchecker "R (>= 3.3)"
urltools "R (>= 2.10)"
usethis "R (>= 3.6)"
UsingR "R (>= 2.15.0), MASS, HistData, Hmisc"
utf8 "R (>= 2.10)"
uuid "R (>= 2.9.0)"
vcfR "R (>= 3.0.1)"
vctrs "R (>= 3.5.0)"
vegan "permute (>= 0.9-0), R (>= 4.1.0)"
venn "R (>= 3.5.0)"
VennDiagram "R (>= 3.5.0), grid (>= 2.14.1), futile.logger"
VGAM "R (>= 4.1.0), methods, stats, stats4, splines"
viridis "R (>= 2.10), viridisLite (>= 0.4.0)"
viridisLite "R (>= 2.10)"
vroom "R (>= 3.6)"
vsn "R (>= 4.0.0), methods, Biobase"
waldo "R (>= 4.0)"
webchem "R (>= 3.0)"
websocket NA
whisker NA
WikidataQueryServiceR "R (>= 3.1.2)"
WikidataR "R (>= 3.5.0)"
WikipediR NA
wikitaxa "R(>= 3.2.1)"
withr "R (>= 3.6.0)"
wk "R (>= 2.10)"
worrms NA
xfun "R (>= 3.2.0)"
XML "R (>= 4.0.0), methods, utils"
xml2 "R (>= 3.6.0)"
xmlparsedata "R (>= 3.0.0)"
xopen "R (>= 3.1)"
xtable "R (>= 2.10.0)"
xts "R (>= 3.6.0), zoo (>= 1.7-12)"
XVector "R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=\n0.27.12), IRanges (>= 2.23.9)"
yaml NA
yulab.utils NA
zip NA
zlibbioc NA
zoo "R (>= 3.1.0), stats"
base NA
boot "R (>= 3.0.0), graphics, stats"
class "R (>= 3.0.0), stats, utils"
cluster "R (>= 3.5.0)"
codetools "R (>= 2.1)"
compiler NA
datasets NA
foreign "R (>= 4.0.0)"
graphics NA
grDevices NA
grid NA
KernSmooth "R (>= 2.5.0), stats"
lattice "R (>= 4.0.0)"
MASS "R (>= 4.0), grDevices, graphics, stats, utils"
Matrix "R (>= 3.5.0), methods"
methods NA
mgcv "R (>= 3.6.0), nlme (>= 3.1-64)"
nlme "R (>= 3.5.0)"
nnet "R (>= 3.0.0), stats, utils"
parallel NA
rpart "R (>= 2.15.0), graphics, stats, grDevices"
spatial "R (>= 3.0.0), graphics, stats, utils"
splines NA
stats NA
stats4 NA
survival "R (>= 3.5.0)"
tcltk NA
tools NA
translations NA
utils NA
Imports
abind "methods, utils"
ade4 "graphics, grDevices, methods, stats, utils, MASS, pixmap, sp,\nRcpp"
adegenet "utils, stats, grDevices, MASS, igraph, ape, shiny, ggplot2,\nseqinr, parallel, boot, reshape2, dplyr (>= 0.4.1), vegan"
adegraphics "ade4 (>= 1.7-13), graphics, grid, KernSmooth, lattice,\nlatticeExtra, methods, RColorBrewer, sp (>= 1.1-1), stats"
adephylo "phylobase, ape, adegenet"
adespatial "ade4 (>= 1.7-13), adegraphics, adephylo, sp, spdep, lattice,\nmethods, grDevices, graphics, MASS, stats, utils, shiny, vegan"
admisc "methods"
affy "affyio (>= 1.13.3), BiocManager, graphics, grDevices, methods,\npreprocessCore, stats, utils, zlibbioc"
affyio "zlibbioc, methods"
annotate "Biobase, DBI, xtable, graphics, utils, stats, methods,\nBiocGenerics (>= 0.13.8), httr"
AnnotationDbi "DBI, RSQLite, S4Vectors (>= 0.9.25), stats, KEGGREST"
ape "nlme, lattice, graphics, methods, stats, utils, parallel, Rcpp\n(>= 0.12.0), digest"
aplot "ggfun (>= 0.1.3), ggplot2, ggplotify, patchwork, magrittr,\nmethods, utils"
ash NA
AsioHeaders NA
askpass "sys (>= 2.1)"
assertthat "tools"
backports NA
base64enc NA
BH NA
bigassertr NA
bigparallelr "bigassertr (>= 0.1.1), doParallel, flock, parallel,\nparallelly, RhpcBLASctl"
bigstatsr "bigassertr (>= 0.1.7), bigparallelr (>= 0.2.3), cowplot,\nforeach, ggplot2 (>= 3.0), graphics, methods, ps (>= 1.4),\nRcpp, rmio (>= 0.4), RSpectra, stats, tibble, utils"
Biobase "methods"
BiocFileCache "methods, stats, utils, dplyr, RSQLite, DBI, filelock, curl,\nhttr"
BiocGenerics "methods, utils, graphics, stats"
BiocIO "BiocGenerics, S4Vectors, methods, tools"
BiocManager "utils"
BiocParallel "stats, utils, futile.logger, parallel, snow, codetools"
BiocStyle "bookdown, knitr (>= 1.30), rmarkdown (>= 1.2), stats, utils,\nyaml, BiocManager"
BiocVersion NA
biomaRt "utils, XML (>= 3.99-0.7), AnnotationDbi, progress, stringr,\nhttr, digest, BiocFileCache, rappdirs, xml2"
biostat "boot, broom, checkmate, dplyr (>= 0.8.0), fitdistrplus,\nforcats, glue, htmlwidgets, MASS, methods, multcompView,\nnortest, pander, psych, purrr, readr, rlang, shinyjs, stats,\nstringr, styler, SuppDists, tibble, tidyr, withr"
Biostrings "methods, utils, grDevices, graphics, stats, crayon"
bit NA
bit64 "graphics, methods, stats, utils"
bitops NA
bladderbatch NA
blob "methods, rlang, vctrs (>= 0.2.1)"
bookdown "htmltools (>= 0.3.6), knitr (>= 1.38), rmarkdown (>= 2.14),\njquerylib, xfun (>= 0.48), tinytex (>= 0.12), yaml (>= 2.1.19)"
boot NA
brew NA
brio NA
broom "backports, cli, dplyr (>= 1.0.0), generics (>= 0.0.2), glue,\nlifecycle, purrr, rlang (>= 1.1.0), stringr, tibble (>= 3.0.0),\ntidyr (>= 1.0.0)"
bslib "base64enc, cachem, fastmap (>= 1.1.1), grDevices, htmltools\n(>= 0.5.8), jquerylib (>= 0.1.3), jsonlite, lifecycle, memoise\n(>= 2.0.1), mime, rlang, sass (>= 0.4.9)"
cachem "rlang, fastmap (>= 1.2.0)"
Cairo "grDevices, graphics"
callr "processx (>= 3.6.1), R6, utils"
car "abind, Formula, MASS, mgcv, nnet, pbkrtest (>= 0.4-4),\nquantreg, grDevices, utils, stats, graphics, lme4 (>=\n1.1-27.1), nlme, scales"
carData NA
caret "e1071, foreach, grDevices, methods, ModelMetrics (>= 1.2.2.2),\nnlme, plyr, pROC, recipes (>= 0.1.10), reshape2, stats, stats4,\nutils, withr (>= 2.0.0)"
caTools "bitops"
cellranger "rematch, tibble"
checkmate "backports (>= 1.1.0), utils"
classInt "grDevices, stats, graphics, e1071, class, KernSmooth"
cli "utils"
clipr "utils"
clock "cli (>= 3.6.1), lifecycle (>= 1.0.3), rlang (>= 1.1.0), tzdb\n(>= 0.4.0), vctrs (>= 0.6.1)"
clue "stats, cluster, graphics, methods"
cluster "graphics, grDevices, stats, utils"
clusterProfiler "AnnotationDbi, downloader, DOSE (>= 3.23.2), dplyr, enrichplot\n(>= 1.9.3), GO.db, GOSemSim (>= 2.27.2), gson (>= 0.0.7), httr,\nigraph, magrittr, methods, plyr, qvalue, rlang, stats, tidyr,\nutils, yulab.utils (>= 0.0.7)"
codetools NA
coin "methods, parallel, stats, stats4, utils, libcoin (>= 1.0-9),\nmatrixStats (>= 0.54.0), modeltools (>= 0.2-9), mvtnorm (>=\n1.0-5), multcomp"
collections NA
colorspace "graphics, grDevices, stats"
colourpicker "ggplot2, htmltools, htmlwidgets (>= 0.7), jsonlite, miniUI (>=\n0.1.1), shiny (>= 0.11.1), shinyjs (>= 2.0.0), utils"
commonmark NA
conflicted "cli (>= 3.4.0), memoise, rlang (>= 1.0.0)"
contrast "nlme, sandwich, rms"
corpcor "stats"
corrplot NA
covr "digest, stats, utils, jsonlite, rex, httr, crayon, withr (>=\n1.0.2), yaml"
cowplot "ggplot2 (>= 3.4.0), grid, gtable, grDevices, methods, rlang,\nscales"
cpp11 NA
crayon "grDevices, methods, utils"
credentials "openssl (>= 1.3), sys (>= 2.1), curl, jsonlite, askpass"
crmn NA
crosstalk "htmltools (>= 0.3.6), jsonlite, lazyeval, R6"
crul "curl (>= 3.3), R6 (>= 2.2.0), urltools (>= 1.6.0), httpcode\n(>= 0.2.0), jsonlite, mime"
curl NA
CustomSelection NA
cyclocomp "callr, crayon, desc, remotes, withr"
data.table "methods"
data.tree "R6, stringi, methods"
DBI NA
dbplyr "blob (>= 1.2.0), cli (>= 3.6.1), DBI (>= 1.1.3), dplyr (>=\n1.1.2), glue (>= 1.6.2), lifecycle (>= 1.0.3), magrittr,\nmethods, pillar (>= 1.9.0), purrr (>= 1.0.1), R6 (>= 2.2.2),\nrlang (>= 1.1.1), tibble (>= 3.2.1), tidyr (>= 1.3.0),\ntidyselect (>= 1.2.1), utils, vctrs (>= 0.6.3), withr (>=\n2.5.0)"
DelayedArray "stats"
deldir "graphics, grDevices"
dendextend "utils, stats, datasets, magrittr (>= 1.0.1), ggplot2, viridis"
Deriv "methods"
desc "cli, R6, utils"
DescTools "graphics, grDevices, methods, MASS, utils, boot, mvtnorm,\nexpm, Rcpp (>= 0.12.10), rstudioapi, Exact, gld, data.table,\nreadxl, haven, httr, withr, cli"
DESeq2 "BiocGenerics (>= 0.7.5), Biobase, BiocParallel, matrixStats,\nmethods, stats4, locfit, ggplot2 (>= 3.4.0), Rcpp (>= 0.11.0),\nMatrixGenerics"
devtools "cli (>= 3.3.0), desc (>= 1.4.1), ellipsis (>= 0.3.2), fs (>=\n1.5.2), lifecycle (>= 1.0.1), memoise (>= 2.0.1), miniUI (>=\n0.1.1.1), pkgbuild (>= 1.3.1), pkgdown (>= 2.0.6), pkgload (>=\n1.3.0), profvis (>= 0.3.7), rcmdcheck (>= 1.4.0), remotes (>=\n2.4.2), rlang (>= 1.0.4), roxygen2 (>= 7.2.1), rversions (>=\n2.1.1), sessioninfo (>= 1.2.2), stats, testthat (>= 3.1.5),\ntools, urlchecker (>= 1.0.1), utils, withr (>= 2.5.0)"
diagram "stats, graphics"
diffobj "crayon (>= 1.3.2), tools, methods, utils, stats"
digest "utils"
doBy "boot, broom, cowplot, Deriv, dplyr, ggplot2, MASS, Matrix,\nmodelr, microbenchmark, rlang, tibble, tidyr,"
doParallel NA
DOSE "AnnotationDbi, HDO.db, BiocParallel, fgsea, ggplot2, GOSemSim\n(>= 2.27.1), methods, qvalue, reshape2, stats, utils,\nyulab.utils"
downlit "brio, desc, digest, evaluate, fansi, memoise, rlang, vctrs,\nwithr, yaml"
downloader "utils, digest"
dplyr "cli (>= 3.4.0), generics, glue (>= 1.3.2), lifecycle (>=\n1.0.3), magrittr (>= 1.5), methods, pillar (>= 1.9.0), R6,\nrlang (>= 1.1.0), tibble (>= 3.2.0), tidyselect (>= 1.2.0),\nutils, vctrs (>= 0.6.4)"
dslabs "ggplot2"
DT "htmltools (>= 0.3.6), htmlwidgets (>= 1.3), httpuv, jsonlite\n(>= 0.9.16), magrittr, crosstalk, jquerylib, promises"
dtplyr "cli (>= 3.4.0), data.table (>= 1.13.0), dplyr (>= 1.1.0),\nglue, lifecycle, rlang (>= 1.0.4), tibble, tidyselect (>=\n1.2.0), vctrs (>= 0.4.1)"
dunn.test NA
e1071 "graphics, grDevices, class, stats, methods, utils, proxy"
earth NA
edgeR "methods, graphics, stats, utils, locfit, Rcpp"
ellipse NA
ellipsis "rlang (>= 0.3.0)"
embroidr "dplyr (>= 1.0.0), farver (>= 2.0.0), ggplot2 (>= 3.0.0),\nggpubr (>= 0.4.0), grid (>= 4.0.0), magrittr (>= 2.0.0), purrr\n(>= 0.3.0), svglite (>= 2.0.0), tidyr (>= 1.0.0)"
emmeans "estimability (>= 1.4.1), graphics, methods, numDeriv, stats,\nutils, mvtnorm"
enrichplot "aplot (>= 0.2.1), DOSE (>= 3.16.0), ggfun (>= 0.1.3),\nggnewscale, ggplot2, ggraph, graphics, grid, igraph, methods,\nplyr, purrr, RColorBrewer, reshape2, rlang, stats, utils,\nscatterpie, shadowtext, GOSemSim, magrittr, ggtree, yulab.utils\n(>= 0.0.8)"
entropy NA
estimability NA
evaluate NA
Exact "graphics, stats, utils, rootSolve"
expm "methods"
expsmooth NA
extrafont "extrafontdb, grDevices, utils, Rttf2pt1"
extrafontdb NA
fansi "grDevices, utils"
farver NA
fastmap NA
fastmatch NA
feather "Rcpp, tibble (>= 2.0.0), hms"
ff NA
fgsea "Rcpp, data.table, BiocParallel, stats, ggplot2 (>= 2.2.0),\ncowplot, grid, fastmatch, Matrix, scales, utils"
filelock NA
fitdistrplus "stats, rlang"
flock "Rcpp (>= 0.11.3), methods"
fma NA
fontawesome "rlang (>= 1.0.6), htmltools (>= 0.5.1.1)"
forcats "cli (>= 3.4.0), glue, lifecycle, magrittr, rlang (>= 1.0.0),\ntibble"
foreach "codetools, utils, iterators"
forecast "colorspace, fracdiff, generics (>= 0.1.2), ggplot2 (>= 2.2.1),\ngraphics, lmtest, magrittr, nnet, parallel, Rcpp (>= 0.11.0),\nstats, timeDate, tseries, urca, withr, zoo"
forestplot NA
formatR NA
Formula NA
fpp2 "cli (>= 1.0.0), crayon (>= 1.3.4), expsmooth, fma, forecast\n(>= 8.3), ggplot2, magrittr (>= 1.5), purrr (>= 0.2.4),\nrstudioapi (>= 0.7)"
fracdiff "stats"
fs "methods"
FSA "graphics, grDevices, stats, tools, utils, car, dunn.test,\nlmtest, plotrix, withr"
furrr "globals (>= 0.14.0), lifecycle (>= 1.0.1), purrr (>= 0.3.4),\nrlang (>= 1.0.2), vctrs (>= 0.4.1)"
futile.logger "utils, lambda.r (>= 1.1.0), futile.options"
futile.options NA
future "digest, globals (>= 0.16.1), listenv (>= 0.8.0), parallel,\nparallelly (>= 1.38.0), utils"
future.apply "globals (>= 0.16.1), parallel, utils"
gapminder "tibble"
gargle "cli (>= 3.0.1), fs (>= 1.3.1), glue (>= 1.3.0), httr (>=\n1.4.5), jsonlite, lifecycle, openssl, rappdirs, rlang (>=\n1.1.0), stats, utils, withr"
gaston ""
gee NA
geepack "MASS, broom, magrittr"
genefilter "MatrixGenerics (>= 1.11.1), AnnotationDbi, annotate, Biobase,\ngraphics, methods, stats, survival, grDevices"
genepop "Rcpp (>= 0.12.10), stringr"
generics "methods"
GenomeInfoDb "stats, stats4, utils, RCurl, GenomeInfoDbData"
GenomeInfoDbData NA
GenomicAlignments "methods, utils, stats, BiocGenerics, S4Vectors, IRanges,\nGenomicRanges, Biostrings, Rsamtools, BiocParallel"
GenomicFeatures "methods, utils, stats, tools, httr, rjson, DBI, RSQLite (>=\n2.0), XVector (>= 0.19.7), Biostrings (>= 2.47.6), BiocIO,\nrtracklayer (>= 1.51.5), biomaRt (>= 2.58.2), Biobase (>=\n2.15.1)"
GenomicRanges "utils, stats, XVector (>= 0.29.2)"
genstats "RSkittleBrewer"
geodata NA
gert "askpass, credentials (>= 1.2.1), openssl (>= 2.0.3),\nrstudioapi (>= 0.11), sys, zip (>= 2.1.0)"
GetoptLong "rjson, GlobalOptions (>= 0.1.0), methods, crayon"
ggalt "utils, graphics, grDevices, dplyr, RColorBrewer, KernSmooth,\nproj4, scales, grid, gtable, ash, maps, MASS, extrafont,\ntibble, plotly (>= 3.4.1)"
ggExtra "colourpicker (>= 1.0), ggplot2 (>= 2.2.0), grDevices, grid (>=\n3.1.3), gtable (>= 0.2.0), miniUI (>= 0.1.1), scales (>=\n0.2.0), shiny (>= 0.13.0), shinyjs (>= 0.5.2), utils, R6"
ggforce "Rcpp (>= 0.12.2), grid, scales, MASS, tweenr (>= 0.1.5),\ngtable, rlang, polyclip, stats, grDevices, tidyselect, withr,\nutils, lifecycle, cli, vctrs, systemfonts"
ggfortify "dplyr (>= 0.3), tidyr, gridExtra, grid, scales, stringr,\ntibble"
ggfun "cli, dplyr, ggplot2, grid, rlang, utils, yulab.utils (>=\n0.1.6)"
ggmsa "Biostrings, ggplot2, magrittr, tidyr, utils, stats, aplot,\nRColorBrewer, ggalt, ggforce, dplyr, R4RNA, grDevices,\nseqmagick, grid, methods, statebins, ggtree (>= 1.17.1)"
ggnewscale "ggplot2 (>= 3.5.0)"
ggplot2 "cli, glue, grDevices, grid, gtable (>= 0.1.1), isoband,\nlifecycle (> 1.0.1), MASS, mgcv, rlang (>= 1.1.0), scales (>=\n1.3.0), stats, tibble, vctrs (>= 0.6.0), withr (>= 2.5.0)"
ggplotify "ggplot2, graphics, grDevices, grid, gridGraphics, yulab.utils"
ggpolypath NA
ggpubr "ggrepel (>= 0.9.2), grid, ggsci, stats, utils, tidyr (>=\n1.3.0), purrr, dplyr (>= 0.7.1), cowplot (>= 1.1.1), ggsignif,\nscales, gridExtra, glue, polynom, rlang (>= 0.4.6), rstatix (>=\n0.7.2), tibble, magrittr"
ggraph "dplyr, ggforce (>= 0.3.1), grid, igraph (>= 1.0.0), scales,\nMASS, ggrepel, utils, stats, viridis, rlang, tidygraph,\ngraphlayouts (>= 1.1.0), withr, cli, vctrs, lifecycle, memoise"
ggrepel "grid, Rcpp, rlang (>= 0.3.0), scales (>= 0.5.0), withr (>=\n2.5.0)"
ggsci "ggplot2 (>= 2.0.0), grDevices, scales"
ggsignif "ggplot2 (>= 3.3.5)"
ggspatial "sf, ggplot2 (>= 3.0.0), rosm (>= 0.2), abind, methods, tibble,\nscales, tidyr, rlang, grid, glue"
ggtext "ggplot2 (>= 3.3.0), grid, gridtext, rlang, scales"
ggtranscript "dplyr, GenomicRanges, ggplot2, magrittr, rlang, S4Vectors,\nGenomeInfoDb, ggrepel"
ggtree "ape, aplot, dplyr, ggplot2 (> 3.3.6), grid, magrittr, methods,\npurrr, rlang, ggfun (>= 0.0.9), yulab.utils, tidyr, tidytree\n(>= 0.4.5), treeio (>= 1.8.0), utils, scales, stats, cli"
ggvenn NA
gh "cli (>= 3.0.1), gitcreds, glue, httr2, ini, jsonlite,\nlifecycle, rlang (>= 1.0.0)"
gitcreds NA
glasso NA
gld "stats, graphics, e1071, lmom"
GlobalAncova "annotate, AnnotationDbi, Biobase, dendextend, GSEABase, VGAM"
GlobalOptions "utils"
globals "codetools"
globaltest "Biobase, AnnotationDbi, annotate, graphics"
glue "methods"
Gmisc "abind, checkmate, forestplot, Hmisc, glue, grid, grDevices,\ngraphics, knitr, lattice, lubridate, magrittr, methods, rlang,\nrmarkdown, stringr, stats, XML, yaml, utils"
GO.db NA
googledrive "cli (>= 3.0.0), gargle (>= 1.5.0), glue (>= 1.4.2), httr,\njsonlite, lifecycle, magrittr, pillar (>= 1.9.0), purrr (>=\n1.0.1), rlang (>= 1.0.2), tibble (>= 2.0.0), utils, uuid, vctrs\n(>= 0.3.0), withr"
googlesheets4 "cellranger, cli (>= 3.0.0), curl, gargle (>= 1.5.0), glue (>=\n1.3.0), googledrive (>= 2.1.0), httr, ids, lifecycle, magrittr,\nmethods, purrr, rematch2, rlang (>= 1.0.2), tibble (>= 2.1.1),\nutils, vctrs (>= 0.2.3), withr"
GOSemSim "AnnotationDbi, GO.db, methods, rlang, stats, utils,\nyulab.utils"
gower NA
GPArotation "stats"
gplots "gtools, stats, caTools, KernSmooth, methods"
graph "stats, stats4, utils"
graphlayouts "igraph (>= 2.0.0), Rcpp"
gridBase "graphics, grid"
gridExtra "gtable, grid, grDevices, graphics, utils"
gridGraphics "grDevices"
gridtext "curl, grid, grDevices, markdown, rlang, Rcpp, png, jpeg,\nstringr, xml2"
GSEABase "AnnotationDbi, XML"
gson "jsonlite, methods, rlang, stats, tidyr, utils"
gtable "cli, glue, grid, lifecycle, rlang (>= 1.1.0), stats"
gtools NA
hardhat "cli (>= 3.6.0), glue (>= 1.6.2), rlang (>= 1.1.0), tibble (>=\n3.2.1), vctrs (>= 0.6.0)"
haven "cli (>= 3.0.0), forcats (>= 0.2.0), hms, lifecycle, methods,\nreadr (>= 0.1.0), rlang (>= 0.4.0), tibble, tidyselect, vctrs\n(>= 0.3.0)"
HDO.db "AnnotationDbi, methods, utils"
hierfstat "ade4,adegenet,gaston,gtools,methods"
highr "xfun (>= 0.18)"
HistData NA
Hmisc "methods, ggplot2, cluster, rpart, nnet, foreign, gtable, grid,\ngridExtra, data.table, htmlTable (>= 1.11.0), viridis,\nhtmltools, base64enc, colorspace, rmarkdown, knitr, Formula"
hms "lifecycle, methods, pkgconfig, rlang (>= 1.0.2), vctrs (>=\n0.3.8)"
hoardr "R6, rappdirs, digest"
htmlTable "stringr, knitr (>= 1.6), magrittr (>= 1.5), methods,\ncheckmate, htmlwidgets, htmltools, rstudioapi (>= 0.6)"
htmltools "base64enc, digest, fastmap (>= 1.1.0), grDevices, rlang (>=\n1.0.0), utils"
htmlwidgets "grDevices, htmltools (>= 0.5.7), jsonlite (>= 0.9.16), knitr\n(>= 1.8), rmarkdown, yaml"
httpcode NA
httpuv "later (>= 0.8.0), promises, R6, Rcpp (>= 1.0.7), utils"
httr "curl (>= 5.0.2), jsonlite, mime, openssl (>= 0.8), R6"
httr2 "cli (>= 3.0.0), curl (>= 6.0.1), glue, lifecycle, magrittr,\nopenssl, R6, rappdirs, rlang (>= 1.1.0), vctrs (>= 0.6.3),\nwithr"
ids "openssl, uuid"
igraph "cli, graphics, grDevices, lifecycle, magrittr, Matrix,\npkgconfig (>= 2.0.0), rlang, stats, utils, vctrs"
impute NA
ini NA
interp "Rcpp (>= 0.12.9), deldir"
ipred "rpart (>= 3.1-8), MASS, survival, nnet, class, prodlim"
IRanges "stats4"
isoband "grid, utils"
iterators NA
jpeg NA
jquerylib "htmltools"
jsonlite NA
kableExtra "knitr (>= 1.33), magrittr, stringr (>= 1.0), xml2 (>= 1.1.1),\nrmarkdown (>= 1.6.0), scales, viridisLite, stats, grDevices,\nhtmltools, rstudioapi, tools, digest, graphics, svglite"
KEGGgraph "methods, XML (>= 2.3-0), graph, utils, RCurl, Rgraphviz"
KEGGREST "methods, httr, png, Biostrings"
KernSmooth NA
knitr "evaluate (>= 0.15), highr (>= 0.11), methods, tools, xfun (>=\n0.51), yaml (>= 2.1.19)"
labeling "stats, graphics"
lambda.r "formatR"
languageserver "callr (>= 3.0.0), collections (>= 0.3.0), fs (>= 1.3.1),\njsonlite (>= 1.6), lintr (>= 3.0.0), parallel, R6 (>= 2.4.1),\nroxygen2 (>= 7.0.0), stringi (>= 1.1.7), styler (>= 1.5.1),\ntools, utils, xml2 (>= 1.2.2), xmlparsedata (>= 1.0.3)"
later "Rcpp (>= 0.12.9), rlang"
lattice "grid, grDevices, graphics, stats, utils"
latticeExtra "grid, stats, utils, grDevices, png, jpeg, RColorBrewer,\ninterp, MASS"
lava "cli, future.apply, graphics, grDevices, methods, numDeriv,\nprogressr, stats, survival, SQUAREM, utils"
lazyeval NA
libcoin "stats, mvtnorm"
lifecycle "cli (>= 3.4.0), glue, rlang (>= 1.1.0)"
limma "grDevices, graphics, stats, utils, methods, statmod"
lintr "backports (>= 1.1.7), codetools, cyclocomp, digest, glue,\nknitr, rex, stats, utils, xml2 (>= 1.0.0), xmlparsedata (>=\n1.0.5)"
listenv NA
lme4 "graphics, grid, splines, utils, parallel, MASS, lattice, boot,\nnlme (>= 3.1-123), minqa (>= 1.1.15), nloptr (>= 1.0.4),\nreformulas (>= 0.3.0)"
lmom "stats, graphics"
lmtest "graphics"
locfit "lattice"
lsmeans NA
lubridate "generics, timechange (>= 0.3.0)"
magrittr NA
MALDIquant "parallel"
maps "graphics, utils"
markdown "utils, commonmark (>= 1.9.0), xfun (>= 0.38)"
MatrixGenerics "methods"
MatrixModels "stats, methods, Matrix (>= 1.6-0), Matrix(< 1.8-0)"
matrixStats NA
mclust "stats, utils, graphics, grDevices"
memoise "rlang (>= 0.4.10), cachem"
memuse "methods, utils"
MetaboAnalystR "RBGL, RColorBrewer, RSQLite, Cairo, Rcpp (>= 1.0.5), ggplot2,\nBiocParallel, progress, Rserve, rlang, jsonlite, plyr, purrr,\ndata.table, vctrs, qs, pROC, caret, crmn, dplyr, edgeR, fgsea,\nglasso, gplots, igraph, impute, pcaMethods, plotly, scales,\nMSnbase, tibble, siggenes, lattice, MASS"
microbenchmark "graphics, stats"
mime "tools"
miniUI "shiny (>= 0.13), htmltools (>= 0.3), utils"
minpack.lm NA
minqa "Rcpp (>= 0.9.10)"
mmod "stats, pegas"
mnormt NA
mockr "rlang, withr"
ModelMetrics "Rcpp, data.table"
modelr "broom, magrittr, purrr (>= 0.2.2), rlang (>= 1.0.6), tibble,\ntidyr (>= 0.8.0), tidyselect, vctrs"
modeltools "methods"
msa "Rcpp (>= 0.11.1), BiocGenerics, IRanges (>= 1.20.0),\nS4Vectors, tools"
MsCoreUtils "methods, S4Vectors, MASS, stats, clue"
MSnbase "MsCoreUtils, BiocParallel, IRanges (>= 2.13.28), plyr, vsn,\ngrid, stats4, affy, impute, pcaMethods, MALDIquant (>= 1.16),\nmzID (>= 1.5.2), digest, lattice, ggplot2, XML, scales, MASS,\nRcpp"
mtbls2 NA
multcomp "sandwich (>= 2.3-0), codetools"
multcompView "grid"
multtest "survival, MASS, stats4"
munsell "colorspace, methods"
mvtnorm "stats"
mzID "XML, plyr, parallel, doParallel, foreach, iterators,\nProtGenerics"
mzR "Biobase, BiocGenerics (>= 0.13.6), ProtGenerics (>= 1.17.3),\nncdf4"
natserv "crul (>= 0.7.0), jsonlite, tibble"
ncdf4 NA
networkD3 "htmlwidgets (>= 0.3.2), igraph, magrittr"
nloptr NA
nortest "stats"
numDeriv NA
onekp "rvest, magrittr, dplyr, xml2, methods, rlang, taxizedb (>=\n0.1.6)"
openssl "askpass"
openxlsx "grDevices, methods, Rcpp, stats, stringi, utils, zip"
OptiLCMS "mzR (>= 2.22.0), lattice, RColorBrewer, plyr, RJSONIO,\nparallel, tools, grDevices, grid, graphics, RBGL, S4Vectors,\nggplot2, graph, progress, rsm, Cairo, Hmisc, entropy, cluster,\ndata.table, scales, ggrepel, Rcpp (>= 1.0.9)"
pagedown "rmarkdown (>= 2.13), bookdown (>= 0.8), htmltools, jsonlite,\nlater (>= 1.0.0), processx, servr (>= 0.31), httpuv, xfun,\nwebsocket"
pander "grDevices, graphics, methods, utils, stats, digest, tools,\nRcpp"
pandoc "fs, rappdirs, rlang (>= 1.0.1)"
parallelly "parallel, tools, utils"
patchwork "ggplot2 (>= 3.0.0), gtable, grid, stats, grDevices, utils,\ngraphics, rlang (>= 1.0.0), cli, farver"
pbapply "parallel"
pbkrtest "broom, dplyr, MASS, methods, numDeriv, Matrix (>= 1.2.3), doBy"
pcaMethods "BiocGenerics, Rcpp (>= 0.11.3), MASS"
pegas "graphics, utils, methods"
permute "stats"
phangorn "digest, fastmatch, generics, graphics, grDevices, igraph (>=\n1.0), Matrix, methods, parallel, quadprog, Rcpp, stats, utils"
phylobase "ade4, ape (>= 3.0), Rcpp (>= 0.11.0), rncl (>= 0.6.0), grid,\nmethods, stats, RNeXML"
pillar "cli (>= 2.3.0), glue, lifecycle, rlang (>= 1.0.2), utf8 (>=\n1.1.0), utils, vctrs (>= 0.5.0)"
pinfsc50 NA
pixmap "methods, graphics, grDevices"
pkgbuild "callr (>= 3.2.0), cli (>= 3.4.0), desc, processx, R6"
pkgconfig "utils"
pkgdown "bslib (>= 0.5.1), callr (>= 3.7.3), cli (>= 3.6.1), desc (>=\n1.4.0), digest, downlit (>= 0.4.4), fontawesome, fs (>= 1.4.0),\nhttr2 (>= 1.0.2), jsonlite, openssl, purrr (>= 1.0.0), ragg,\nrlang (>= 1.1.0), rmarkdown (>= 2.27), tibble, whisker, withr\n(>= 2.4.3), xml2 (>= 1.3.1), yaml"
pkgload "cli (>= 3.3.0), desc, fs, glue, lifecycle, methods, pkgbuild,\nprocessx, rlang (>= 1.1.1), rprojroot, utils, withr (>= 2.4.3)"
plogr NA
plotly "tools, scales, httr (>= 1.3.0), jsonlite (>= 1.6), magrittr,\ndigest, viridisLite, base64enc, htmltools (>= 0.3.6),\nhtmlwidgets (>= 1.5.2.9001), tidyr (>= 1.0.0), RColorBrewer,\ndplyr, vctrs, tibble, lazyeval (>= 0.2.0), rlang (>= 0.4.10),\ncrosstalk, purrr, data.table, promises"
plotmo NA
plotrix "grDevices, graphics, stats, utils"
pls "grDevices, graphics, methods, stats"
plyr "Rcpp (>= 0.11.0)"
png NA
polspline "stats, graphics"
polyclip NA
polynom "stats, graphics"
polysat "methods, stats, utils, grDevices, graphics, Rcpp"
PopGenHelpR "dplyr, ggplot2, magrittr, methods, reshape2, rlang,\nscatterpie, stats, geodata, terra, ggspatial, spdep, sf, utils,\nvcfR"
poppr "stats, graphics, grDevices, utils, vegan, ggplot2, ape (>=\n3.1-1), igraph (>= 1.0.0), methods, ade4, pegas, polysat, dplyr\n(>= 0.4), rlang, boot, shiny, magrittr, progressr"
posterdown "pagedown, rmarkdown, yaml"
poweRlaw "methods, parallel, pracma, stats, utils"
pracma "graphics, grDevices, stats, utils"
praise NA
preprocessCore "stats"
prettyunits NA
pROC "methods, plyr, Rcpp (>= 0.11.1)"
processx "ps (>= 1.2.0), R6, utils"
prodlim "Rcpp (>= 0.11.5), stats, data.table, grDevices, graphics,\ndiagram, survival, KernSmooth, lava"
profvis "htmlwidgets (>= 0.3.2), rlang (>= 1.1.0), vctrs"
progress "crayon, hms, prettyunits, R6"
progressr "digest, utils"
proj4 NA
promises "fastmap (>= 1.1.0), later, magrittr (>= 1.5), R6, Rcpp, rlang,\nstats"
ProtGenerics NA
proxy "stats, utils"
ps "utils"
psych "mnormt,parallel,stats,graphics,grDevices,methods,lattice,nlme,GPArotation"
purrr "cli (>= 3.6.1), lifecycle (>= 1.0.3), magrittr (>= 1.5.0),\nrlang (>= 1.1.1), vctrs (>= 0.6.3)"
qs "Rcpp, RApiSerialize (>= 0.1.4), stringfish (>= 0.15.1)"
quadprog NA
quantmod "curl, jsonlite(>= 1.1)"
quantreg "methods, graphics, Matrix, MatrixModels, survival, MASS"
qvalue "splines, ggplot2, grid, reshape2"
R.cache "utils, R.methodsS3 (>= 1.8.1), R.oo (>= 1.24.0), R.utils (>=\n2.10.1), digest (>= 0.6.13)"
R.methodsS3 "utils"
R.oo "methods, utils"
R.utils "methods, utils, tools, R.methodsS3"
R4RNA NA
R6 NA
rafalib "RColorBrewer, BiocManager"
ragg "systemfonts (>= 1.0.3), textshaping (>= 0.3.0)"
randomForest NA
RApiSerialize NA
rappdirs NA
ratelimitr "assertthat"
RBGL "methods"
rbibutils "utils, tools"
rcmdcheck "callr (>= 3.1.1.9000), cli (>= 3.0.0), curl, desc (>= 1.2.0),\ndigest, pkgbuild, prettyunits, R6, rprojroot, sessioninfo (>=\n1.1.1), utils, withr, xopen"
RColorBrewer NA
rcompanion "stats (>= 4.1.0), graphics (>= 4.1.0), boot (>= 1.3-28),\nDescTools (>= 0.99.43), multcompView (>= 0.1-8), plyr (>=\n1.8.6), coin (>= 1.4-2), lmtest (>= 0.9-38), nortest (>= 1.0-4)"
Rcpp "methods, utils"
RcppArmadillo "Rcpp (>= 1.0.12), stats, utils, methods"
RcppEigen "Rcpp (>= 0.11.0), stats, utils"
RcppParallel NA
RcppProgress NA
RCurl "bitops"
Rdpack "tools, utils, rbibutils (>= 1.3)"
readr "cli (>= 3.2.0), clipr, crayon, hms (>= 0.4.1), lifecycle (>=\n0.2.0), methods, R6, rlang, tibble, utils, vroom (>= 1.6.0)"
readxl "cellranger, tibble (>= 2.0.1), utils"
recipes "cli, clock (>= 0.6.1), generics (>= 0.1.2), glue, gower,\nhardhat (>= 1.4.0), ipred (>= 0.9-12), lifecycle (>= 1.0.3),\nlubridate (>= 1.8.0), magrittr, Matrix, purrr (>= 1.0.0), rlang\n(>= 1.1.0), stats, tibble, tidyr (>= 1.0.0), tidyselect (>=\n1.2.0), timeDate, utils, vctrs (>= 0.5.0), withr"
reformulas "stats, methods, Matrix, Rdpack"
rematch NA
rematch2 "tibble"
remotes "methods, stats, tools, utils"
rentrez "XML, httr (>= 0.5), jsonlite (>= 0.9)"
renv "utils"
reprex "callr (>= 3.6.0), cli (>= 3.2.0), clipr (>= 0.4.0), fs, glue,\nknitr (>= 1.23), lifecycle, rlang (>= 1.0.0), rmarkdown,\nrstudioapi, utils, withr (>= 2.3.0)"
reshape2 "plyr (>= 1.8.1), Rcpp, stringr"
restfulr "XML, RCurl, rjson, S4Vectors (>= 0.13.15), yaml"
rex "lazyeval"
rgl "graphics, grDevices, stats, utils, htmlwidgets (>= 1.6.0),\nhtmltools, knitr (>= 1.33), jsonlite (>= 0.9.20), magrittr, R6,\nbase64enc, mime"
Rgraphviz "stats4, graphics, grDevices"
Rhdf5lib NA
RhpcBLASctl NA
Rhtslib "zlibbioc"
ritis "solrium (>= 1.1.4), crul (>= 0.9.0), jsonlite, data.table,\ntibble"
rjson NA
RJSONIO "methods"
rlang "utils"
rmarkdown "bslib (>= 0.2.5.1), evaluate (>= 0.13), fontawesome (>=\n0.5.0), htmltools (>= 0.5.1), jquerylib, jsonlite, knitr (>=\n1.43), methods, tinytex (>= 0.31), tools, utils, xfun (>=\n0.36), yaml (>= 2.1.19)"
rmio "bigassertr, ff"
rms "methods, survival, quantreg, ggplot2, SparseM, rpart, nlme (>=\n3.1-123), polspline, multcomp, htmlTable (>= 1.11.0),\nhtmltools, MASS, cluster, digest, colorspace, kableExtra,\nknitr, grDevices"
rncl "Rcpp (>= 0.11.0), progress (>= 1.1.2), stats"
RNeXML "XML (>= 3.95), plyr (>= 1.8), reshape2 (>= 1.2.2), httr (>=\n0.3), uuid (>= 0.1-1), dplyr (>= 0.7.0), tidyr (>= 0.3.1),\nstringr (>= 1.0), stringi, xml2, rlang"
rootSolve "stats, graphics, grDevices"
rosm "curl, jpeg, png, wk, glue, progress, rlang"
rotl "ape, curl (>= 3.0.0), httr, jsonlite, rentrez, rlang, rncl (>=\n0.6.0)"
roxygen2 "brew, cli (>= 3.3.0), commonmark, desc (>= 1.2.0), knitr,\nmethods, pkgload (>= 1.0.2), purrr (>= 1.0.0), R6 (>= 2.1.2),\nrlang (>= 1.0.6), stringi, stringr (>= 1.0.0), utils, withr,\nxml2"
rprojroot NA
rredlist "crul (>= 0.3.8), jsonlite (>= 1.1), lifecycle, cli, curl,\nrlang"
Rsamtools "utils, BiocGenerics (>= 0.25.1), S4Vectors (>= 0.17.25),\nIRanges (>= 2.13.12), XVector (>= 0.19.7), zlibbioc, bitops,\nBiocParallel, stats"
Rserve NA
RSkittleBrewer "graphics, stats, grDevices"
rsm "estimability"
RSpectra "Matrix (>= 1.1-0), Rcpp (>= 0.11.5)"
RSQLite "bit64, blob (>= 1.2.0), DBI (>= 1.2.0), memoise, methods,\npkgconfig, rlang"
rstatix "stats, utils, tidyr (>= 1.0.0), purrr, broom (>= 0.7.4), rlang\n(>= 0.3.1), tibble (>= 2.1.3), dplyr (>= 0.7.1), magrittr,\ncorrplot, tidyselect (>= 1.2.0), car, generics (>= 0.0.2)"
rstudioapi NA
rtracklayer "XML (>= 1.98-0), BiocGenerics (>= 0.35.3), S4Vectors (>=\n0.23.18), IRanges (>= 2.13.13), XVector (>= 0.19.7),\nGenomeInfoDb (>= 1.15.2), Biostrings (>= 2.47.6), zlibbioc,\nRCurl (>= 1.4-2), Rsamtools (>= 1.31.2), GenomicAlignments (>=\n1.15.6), BiocIO, tools, restfulr (>= 0.0.13)"
Rttf2pt1 NA
rversions "curl, utils, xml2 (>= 1.0.0)"
rvest "cli, glue, httr (>= 0.5), lifecycle (>= 1.0.3), magrittr,\nrlang (>= 1.1.0), selectr, tibble, xml2 (>= 1.3)"
s2 "Rcpp, wk (>= 0.6.0)"
S4Arrays "stats, crayon"
S4Vectors NA
sandwich "stats, utils, zoo"
sass "fs (>= 1.2.4), rlang (>= 0.4.10), htmltools (>= 0.5.1), R6,\nrappdirs"
scales "cli, farver (>= 2.0.3), glue, labeling, lifecycle, R6,\nRColorBrewer, rlang (>= 1.1.0), viridisLite"
scatterpie "ggforce, rlang, ggfun, stats, tidyr, dplyr, utils, yulab.utils\n(>= 0.1.6)"
scrime "methods, stats, utils"
scriptName "rlang (>= 0.1.0), purrr (>= 0.2.3)"
segmented NA
selectr "methods, stringr, R6"
seqinr "ade4,segmented"
seqmagick "Biostrings, magrittr, stats, utils, yulab.utils (> 0.1.1)"
servr "mime (>= 0.2), httpuv (>= 1.5.2), xfun (>= 0.48), jsonlite"
sessioninfo "cli (>= 3.1.0), tools, utils"
sf "classInt (>= 0.4-1), DBI (>= 0.8), graphics, grDevices, grid,\nmagrittr, s2 (>= 1.1.0), stats, tools, units (>= 0.7-0), utils"
shadowtext "ggplot2, grid, scales"
shape "stats, graphics, grDevices"
shiny "utils, grDevices, httpuv (>= 1.5.2), mime (>= 0.3), jsonlite\n(>= 0.9.16), xtable, fontawesome (>= 0.4.0), htmltools (>=\n0.5.4), R6 (>= 2.0), sourcetools, later (>= 1.0.0), promises\n(>= 1.3.2), tools, crayon, rlang (>= 0.4.10), fastmap (>=\n1.1.1), withr, commonmark (>= 1.7), glue (>= 1.3.2), bslib (>=\n0.6.0), cachem (>= 1.1.0), lifecycle (>= 0.2.0)"
shinyjs "digest (>= 0.6.8), jsonlite, shiny (>= 1.0.0)"
shinythemes "shiny (>= 0.11)"
siggenes "stats4, grDevices, graphics, stats, scrime (>= 1.2.5)"
snow NA
snpStats "graphics, grDevices, stats, utils, BiocGenerics, zlibbioc"
solrium "utils, dplyr (>= 0.5.0), plyr (>= 1.8.4), crul (>= 0.4.0),\nxml2 (>= 1.0.0), jsonlite (>= 1.0), tibble (>= 1.4.2), R6"
sourcetools NA
sp "utils, stats, graphics, grDevices, lattice, grid"
SparseArray "stats, matrixStats, IRanges, XVector"
SparseM "graphics, stats, utils"
spData "sp"
spdep "stats, deldir, boot (>= 1.3-1), graphics, utils, grDevices,\nunits, s2, e1071, sp (>= 1.0)"
splancs "stats, graphics, grDevices, methods"
SQUAREM NA
SSPA "graphics, stats, qvalue, lattice, limma"
statebins "ggplot2 (>= 2.2.1), scales (>= 0.5.0), grid"
statmod "stats, graphics"
stringfish "Rcpp, RcppParallel"
stringi "tools, utils, stats"
stringr "cli, glue (>= 1.6.1), lifecycle (>= 1.0.3), magrittr, rlang\n(>= 1.0.0), stringi (>= 1.5.3), vctrs (>= 0.4.0)"
styler "cli (>= 3.1.1), magrittr (>= 2.0.0), purrr (>= 0.2.3), R.cache\n(>= 0.15.0), rlang (>= 1.0.0), rprojroot (>= 1.1), tools, vctrs\n(>= 0.4.1), withr (>= 2.3.0),"
SummarizedExperiment "utils, stats, tools, Matrix, BiocGenerics (>= 0.37.0),\nS4Vectors (>= 0.33.7), IRanges (>= 2.23.9), GenomeInfoDb (>=\n1.13.1), S4Arrays (>= 1.1.1), DelayedArray (>= 0.27.1)"
SuppDists NA
survival "graphics, Matrix, methods, splines, stats, utils"
sva "matrixStats, stats, graphics, utils, limma, edgeR"
svglite "systemfonts (>= 1.0.0)"
swirl "stringr, testthat (>= 1.0.2), httr (>= 1.1.0), yaml, RCurl,\ndigest, tools, methods"
sys NA
systemfonts "grid, jsonlite, lifecycle, tools, utils"
taxize "graphics, methods, stats, utils, crul (>= 0.7.0), xml2 (>=\n1.2.0), jsonlite, ape, zoo, data.table, tibble (>= 1.2),\nrredlist, rotl (>= 3.0.0), ritis (>= 0.7.6), worrms (>= 0.4.0),\nnatserv (>= 1.0.0), wikitaxa (>= 0.3.0), R6, crayon, cli,\nphangorn, lifecycle, curl, stringi"
taxizedb "curl (>= 2.4), data.table, DBI (>= 0.6-1), RSQLite (>= 1.1.2),\ndplyr (>= 0.7.0), tibble, rlang, readr (>= 1.1.1), dbplyr (>=\n1.0.0), magrittr (>= 1.5), hoardr (>= 0.1.0), taxize, vroom"
terra "methods, Rcpp (>= 1.0-10)"
testthat "brio (>= 1.1.3), callr (>= 3.7.3), cli (>= 3.6.1), desc (>=\n1.4.2), digest (>= 0.6.33), evaluate (>= 1.0.1), jsonlite (>=\n1.8.7), lifecycle (>= 1.0.3), magrittr (>= 2.0.3), methods,\npkgload (>= 1.3.2.1), praise (>= 1.0.0), processx (>= 3.8.2),\nps (>= 1.7.5), R6 (>= 2.5.1), rlang (>= 1.1.1), utils, waldo\n(>= 0.6.0), withr (>= 3.0.2)"
textshaping "lifecycle, systemfonts (>= 1.1.0)"
TH.data NA
tibble "fansi (>= 0.4.0), lifecycle (>= 1.0.0), magrittr, methods,\npillar (>= 1.8.1), pkgconfig, rlang (>= 1.0.2), utils, vctrs\n(>= 0.4.2)"
tidygraph "cli, dplyr (>= 0.8.5), igraph (>= 2.0.0), lifecycle, magrittr,\npillar, R6, rlang, stats, tibble, tidyr, tools, utils"
tidyr "cli (>= 3.4.1), dplyr (>= 1.0.10), glue, lifecycle (>= 1.0.3),\nmagrittr, purrr (>= 1.0.1), rlang (>= 1.1.1), stringr (>=\n1.5.0), tibble (>= 2.1.1), tidyselect (>= 1.2.0), utils, vctrs\n(>= 0.5.2)"
tidyselect "cli (>= 3.3.0), glue (>= 1.3.0), lifecycle (>= 1.0.3), rlang\n(>= 1.0.4), vctrs (>= 0.5.2), withr"
tidytree "ape, dplyr, lazyeval, magrittr, methods, rlang, tibble, tidyr,\ntidyselect, yulab.utils (>= 0.0.4), pillar, cli"
tidyverse "broom (>= 1.0.3), conflicted (>= 1.2.0), cli (>= 3.6.0),\ndbplyr (>= 2.3.0), dplyr (>= 1.1.0), dtplyr (>= 1.2.2), forcats\n(>= 1.0.0), ggplot2 (>= 3.4.1), googledrive (>= 2.0.0),\ngooglesheets4 (>= 1.0.1), haven (>= 2.5.1), hms (>= 1.1.2),\nhttr (>= 1.4.4), jsonlite (>= 1.8.4), lubridate (>= 1.9.2),\nmagrittr (>= 2.0.3), modelr (>= 0.1.10), pillar (>= 1.8.1),\npurrr (>= 1.0.1), ragg (>= 1.2.5), readr (>= 2.1.4), readxl (>=\n1.4.2), reprex (>= 2.0.2), rlang (>= 1.0.6), rstudioapi (>=\n0.14), rvest (>= 1.0.3), stringr (>= 1.5.0), tibble (>= 3.1.8),\ntidyr (>= 1.3.0), xml2 (>= 1.3.3)"
timechange NA
timeDate "graphics, utils, stats"
tinytex "xfun (>= 0.48)"
treeio "ape, dplyr, jsonlite, magrittr, methods, rlang, tibble,\ntidytree (>= 0.4.5), utils, stats"
treemap "colorspace, data.table (>= 1.8.8), ggplot2, grid, gridBase,\nigraph, methods, RColorBrewer, shiny (>= 0.12.0)"
triebeard "Rcpp"
tseries "graphics, stats, utils, quadprog, zoo, quantmod (>= 0.4-9),\njsonlite"
TTR "xts (>= 0.10-0), zoo, curl"
tweenr "farver, magrittr, rlang, vctrs"
tzdb NA
units "Rcpp"
urca "nlme, graphics, stats"
urlchecker "cli, curl, tools, xml2"
urltools "Rcpp, methods, triebeard"
usethis "cli (>= 3.0.1), clipr (>= 0.3.0), crayon, curl (>= 2.7), desc\n(>= 1.4.2), fs (>= 1.3.0), gert (>= 1.4.1), gh (>= 1.2.1), glue\n(>= 1.3.0), jsonlite, lifecycle (>= 1.0.0), purrr, rappdirs,\nrlang (>= 1.1.0), rprojroot (>= 1.2), rstudioapi, stats, tools,\nutils, whisker, withr (>= 2.3.0), yaml"
UsingR NA
utf8 NA
uuid NA
vcfR "ape, dplyr, graphics, grDevices, magrittr, memuse, methods,\npinfsc50, Rcpp, stats, stringr, tibble, utils, vegan,\nviridisLite"
vctrs "cli (>= 3.4.0), glue, lifecycle (>= 1.0.3), rlang (>= 1.1.0)"
vegan "MASS, cluster, lattice, mgcv"
venn "admisc (>= 0.33)"
VennDiagram "methods"
VGAM NA
viridis "ggplot2 (>= 1.0.1), gridExtra"
viridisLite NA
vroom "bit64, cli (>= 3.2.0), crayon, glue, hms, lifecycle (>=\n1.0.3), methods, rlang (>= 0.4.2), stats, tibble (>= 2.0.0),\ntidyselect, tzdb (>= 0.1.1), vctrs (>= 0.2.0), withr"
vsn "affy, limma, lattice, ggplot2"
waldo "cli, diffobj (>= 0.3.4), glue, methods, rlang (>= 1.1.0)"
webchem "xml2, httr, rvest, jsonlite, stringr, methods, dplyr, purrr,\ndata.tree, tibble, base64enc, rlang, utils"
websocket "R6, later (>= 1.2.0)"
whisker NA
WikidataQueryServiceR "httr (>= 1.2.1), dplyr (>= 1.0.0), jsonlite (>= 1.2),\nWikipediR (>= 1.5.0), ratelimitr (>= 0.4.1), purrr (>= 0.3.4),\nreadr (>= 1.3.1), rex (>= 1.2.0)"
WikidataR "httr, jsonlite, WikipediR, WikidataQueryServiceR, tibble,\ndplyr, stringr, Hmisc, progress, pbapply, stats, readr, crayon,\nutils"
WikipediR "httr, jsonlite, magrittr"
wikitaxa "WikidataR, data.table, curl, crul (>= 0.3.4), tibble,\njsonlite, xml2"
withr "graphics, grDevices"
wk NA
worrms "crul (>= 0.6.0), tibble (>= 1.2), jsonlite (>= 1.1),\ndata.table"
xfun "grDevices, stats, tools"
XML NA
xml2 "cli, methods, rlang (>= 1.1.0)"
xmlparsedata NA
xopen "processx"
xtable "stats, utils"
xts "methods"
XVector "methods, utils, tools, zlibbioc, BiocGenerics, S4Vectors,\nIRanges"
yaml NA
yulab.utils "cli, digest, fs, rlang, tools, utils"
zip NA
zlibbioc NA
zoo "utils, graphics, grDevices, lattice (>= 0.20-27)"
base NA
boot NA
class "MASS"
cluster "graphics, grDevices, stats, utils"
codetools NA
compiler NA
datasets NA
foreign "methods, utils, stats"
graphics "grDevices"
grDevices NA
grid "grDevices, utils"
KernSmooth NA
lattice "grid, grDevices, graphics, stats, utils"
MASS "methods"
Matrix "grDevices, graphics, grid, lattice, stats, utils"
methods "utils, stats"
mgcv "methods, stats, graphics, Matrix, splines, utils"
nlme "graphics, stats, utils, lattice"
nnet NA
parallel "tools, compiler"
rpart NA
spatial NA
splines "graphics, stats"
stats "utils, grDevices, graphics"
stats4 "graphics, methods, stats"
survival "graphics, Matrix, methods, splines, stats, utils"
tcltk "utils"
tools NA
translations NA
utils NA
LinkingTo
abind NA
ade4 "Rcpp, RcppArmadillo"
adegenet NA
adegraphics NA
adephylo NA
adespatial NA
admisc NA
affy "preprocessCore"
affyio NA
annotate NA
AnnotationDbi NA
ape "Rcpp"
aplot NA
ash NA
AsioHeaders NA
askpass NA
assertthat NA
backports NA
base64enc NA
BH NA
bigassertr NA
bigparallelr NA
bigstatsr "Rcpp, RcppArmadillo, rmio"
Biobase NA
BiocFileCache NA
BiocGenerics NA
BiocIO NA
BiocManager NA
BiocParallel "BH, cpp11"
BiocStyle NA
BiocVersion NA
biomaRt NA
biostat NA
Biostrings "S4Vectors, IRanges, XVector"
bit NA
bit64 NA
bitops NA
bladderbatch NA
blob NA
bookdown NA
boot NA
brew NA
brio NA
broom NA
bslib NA
cachem NA
Cairo NA
callr NA
car NA
carData NA
caret NA
caTools NA
cellranger NA
checkmate NA
classInt NA
cli NA
clipr NA
clock "cpp11 (>= 0.4.3), tzdb (>= 0.4.0)"
clue NA
cluster NA
clusterProfiler NA
codetools NA
coin "libcoin (>= 1.0-9)"
collections NA
colorspace NA
colourpicker NA
commonmark NA
conflicted NA
contrast NA
corpcor NA
corrplot NA
covr NA
cowplot NA
cpp11 NA
crayon NA
credentials NA
crmn NA
crosstalk NA
crul NA
curl NA
CustomSelection NA
cyclocomp NA
data.table NA
data.tree NA
DBI NA
dbplyr NA
DelayedArray "S4Vectors"
deldir NA
dendextend NA
Deriv NA
desc NA
DescTools "Rcpp"
DESeq2 "Rcpp, RcppArmadillo"
devtools NA
diagram NA
diffobj NA
digest NA
doBy NA
doParallel NA
DOSE NA
downlit NA
downloader NA
dplyr NA
dslabs NA
DT NA
dtplyr NA
dunn.test NA
e1071 NA
earth NA
edgeR "Rcpp"
ellipse NA
ellipsis NA
embroidr NA
emmeans NA
enrichplot NA
entropy NA
estimability NA
evaluate NA
Exact NA
expm NA
expsmooth NA
extrafont NA
extrafontdb NA
fansi NA
farver NA
fastmap NA
fastmatch NA
feather "Rcpp"
ff NA
fgsea "Rcpp, BH"
filelock NA
fitdistrplus NA
flock "Rcpp"
fma NA
fontawesome NA
forcats NA
foreach NA
forecast "Rcpp (>= 0.11.0), RcppArmadillo (>= 0.2.35)"
forestplot NA
formatR NA
Formula NA
fpp2 NA
fracdiff NA
fs NA
FSA NA
furrr NA
futile.logger NA
futile.options NA
future NA
future.apply NA
gapminder NA
gargle NA
gaston "Rcpp, RcppParallel, RcppEigen"
gee NA
geepack NA
genefilter NA
genepop "Rcpp, RcppProgress"
generics NA
GenomeInfoDb NA
GenomeInfoDbData NA
GenomicAlignments "S4Vectors, IRanges"
GenomicFeatures NA
GenomicRanges "S4Vectors, IRanges"
genstats NA
geodata NA
gert NA
GetoptLong NA
ggalt NA
ggExtra NA
ggforce "Rcpp, RcppEigen"
ggfortify NA
ggfun NA
ggmsa NA
ggnewscale NA
ggplot2 NA
ggplotify NA
ggpolypath NA
ggpubr NA
ggraph "cpp11"
ggrepel "Rcpp"
ggsci NA
ggsignif NA
ggspatial NA
ggtext NA
ggtranscript NA
ggtree NA
ggvenn NA
gh NA
gitcreds NA
glasso NA
gld NA
GlobalAncova NA
GlobalOptions NA
globals NA
globaltest NA
glue NA
Gmisc "Rcpp"
GO.db NA
googledrive NA
googlesheets4 NA
GOSemSim "Rcpp"
gower NA
GPArotation NA
gplots NA
graph NA
graphlayouts "Rcpp, RcppArmadillo"
gridBase NA
gridExtra NA
gridGraphics NA
gridtext "Rcpp"
GSEABase NA
gson NA
gtable NA
gtools NA
hardhat NA
haven "cpp11"
HDO.db NA
hierfstat NA
highr NA
HistData NA
Hmisc NA
hms NA
hoardr NA
htmlTable NA
htmltools NA
htmlwidgets NA
httpcode NA
httpuv "later, Rcpp"
httr NA
httr2 NA
ids NA
igraph "cpp11 (>= 0.5.0)"
impute NA
ini NA
interp "Rcpp, RcppEigen"
ipred NA
IRanges "S4Vectors"
isoband NA
iterators NA
jpeg NA
jquerylib NA
jsonlite NA
kableExtra NA
KEGGgraph NA
KEGGREST NA
KernSmooth NA
knitr NA
labeling NA
lambda.r NA
languageserver NA
later "Rcpp"
lattice NA
latticeExtra NA
lava NA
lazyeval NA
libcoin "mvtnorm"
lifecycle NA
limma NA
lintr NA
listenv NA
lme4 "Rcpp (>= 0.10.5), RcppEigen (>= 0.3.3.9.4), Matrix (>=\n1.2-3)"
lmom NA
lmtest NA
locfit NA
lsmeans NA
lubridate NA
magrittr NA
MALDIquant NA
maps NA
markdown NA
MatrixGenerics NA
MatrixModels NA
matrixStats NA
mclust NA
memoise NA
memuse NA
MetaboAnalystR "Rcpp"
microbenchmark NA
mime NA
miniUI NA
minpack.lm NA
minqa "Rcpp"
mmod NA
mnormt NA
mockr NA
ModelMetrics "Rcpp"
modelr NA
modeltools NA
msa "Rcpp"
MsCoreUtils "Rcpp"
MSnbase "Rcpp"
mtbls2 NA
multcomp NA
multcompView NA
multtest NA
munsell NA
mvtnorm NA
mzID NA
mzR "Rcpp, Rhdf5lib (>= 1.1.4)"
natserv NA
ncdf4 NA
networkD3 NA
nloptr NA
nortest NA
numDeriv NA
onekp NA
openssl NA
openxlsx "Rcpp"
OptiLCMS "Rcpp, RcppArmadillo"
pagedown NA
pander "Rcpp"
pandoc NA
parallelly NA
patchwork NA
pbapply NA
pbkrtest NA
pcaMethods "Rcpp"
pegas NA
permute NA
phangorn "Rcpp"
phylobase "Rcpp"
pillar NA
pinfsc50 NA
pixmap NA
pkgbuild NA
pkgconfig NA
pkgdown NA
pkgload NA
plogr NA
plotly NA
plotmo NA
plotrix NA
pls NA
plyr "Rcpp"
png NA
polspline NA
polyclip NA
polynom NA
polysat "Rcpp"
PopGenHelpR NA
poppr NA
posterdown NA
poweRlaw NA
pracma NA
praise NA
preprocessCore NA
prettyunits NA
pROC "Rcpp"
processx NA
prodlim "Rcpp"
profvis NA
progress NA
progressr NA
proj4 NA
promises "later, Rcpp"
ProtGenerics NA
proxy NA
ps NA
psych NA
purrr "cli"
qs "Rcpp, RApiSerialize, stringfish, BH"
quadprog NA
quantmod NA
quantreg NA
qvalue NA
R.cache NA
R.methodsS3 NA
R.oo NA
R.utils NA
R4RNA NA
R6 NA
rafalib NA
ragg "systemfonts, textshaping"
randomForest NA
RApiSerialize NA
rappdirs NA
ratelimitr NA
RBGL "BH"
rbibutils NA
rcmdcheck NA
RColorBrewer NA
rcompanion NA
Rcpp NA
RcppArmadillo "Rcpp"
RcppEigen "Rcpp"
RcppParallel NA
RcppProgress NA
RCurl NA
Rdpack NA
readr "cpp11, tzdb (>= 0.1.1)"
readxl "cpp11 (>= 0.4.0), progress"
recipes NA
reformulas NA
rematch NA
rematch2 NA
remotes NA
rentrez NA
renv NA
reprex NA
reshape2 "Rcpp"
restfulr NA
rex NA
rgl NA
Rgraphviz NA
Rhdf5lib NA
RhpcBLASctl NA
Rhtslib "zlibbioc"
ritis NA
rjson NA
RJSONIO NA
rlang NA
rmarkdown NA
rmio NA
rms NA
rncl "Rcpp, progress"
RNeXML NA
rootSolve NA
rosm NA
rotl NA
roxygen2 "cpp11"
rprojroot NA
rredlist NA
Rsamtools "Rhtslib (>= 1.99.3), S4Vectors, IRanges, XVector, Biostrings"
Rserve NA
RSkittleBrewer NA
rsm NA
RSpectra "Rcpp, RcppEigen (>= 0.3.3.3.0)"
RSQLite "plogr (>= 0.2.0), cpp11 (>= 0.4.0)"
rstatix NA
rstudioapi NA
rtracklayer "S4Vectors, IRanges, XVector"
Rttf2pt1 NA
rversions NA
rvest NA
s2 "Rcpp, wk"
S4Arrays "S4Vectors"
S4Vectors NA
sandwich NA
sass NA
scales NA
scatterpie NA
scrime NA
scriptName NA
segmented NA
selectr NA
seqinr NA
seqmagick NA
servr NA
sessioninfo NA
sf "Rcpp"
shadowtext NA
shape NA
shiny NA
shinyjs NA
shinythemes NA
siggenes NA
snow NA
snpStats NA
solrium NA
sourcetools NA
sp NA
SparseArray "S4Vectors, IRanges, XVector"
SparseM NA
spData NA
spdep NA
splancs NA
SQUAREM NA
SSPA NA
statebins NA
statmod NA
stringfish "Rcpp (>= 0.12.18.3), RcppParallel (>= 5.1.4)"
stringi NA
stringr NA
styler NA
SummarizedExperiment NA
SuppDists NA
survival NA
sva NA
svglite "cpp11, systemfonts"
swirl NA
sys NA
systemfonts "cpp11 (>= 0.2.1)"
taxize NA
taxizedb NA
terra "Rcpp"
testthat NA
textshaping "cpp11 (>= 0.2.1), systemfonts (>= 1.0.0)"
TH.data NA
tibble NA
tidygraph "cpp11"
tidyr "cpp11 (>= 0.4.0)"
tidyselect NA
tidytree NA
tidyverse NA
timechange "cpp11 (>= 0.2.7)"
timeDate NA
tinytex NA
treeio NA
treemap NA
triebeard "Rcpp"
tseries NA
TTR "xts"
tweenr "cpp11 (>= 0.4.2)"
tzdb "cpp11 (>= 0.4.2)"
units "Rcpp (>= 0.12.10)"
urca NA
urlchecker NA
urltools "Rcpp"
usethis NA
UsingR NA
utf8 NA
uuid NA
vcfR "Rcpp"
vctrs NA
vegan NA
venn NA
VennDiagram NA
VGAM NA
viridis NA
viridisLite NA
vroom "cpp11 (>= 0.2.0), progress (>= 1.2.1), tzdb (>= 0.1.1)"
vsn NA
waldo NA
webchem NA
websocket "cpp11, AsioHeaders, later"
whisker NA
WikidataQueryServiceR NA
WikidataR NA
WikipediR NA
wikitaxa NA
withr NA
wk NA
worrms NA
xfun NA
XML NA
xml2 NA
xmlparsedata NA
xopen NA
xtable NA
xts "zoo"
XVector "S4Vectors, IRanges"
yaml NA
yulab.utils NA
zip NA
zlibbioc NA
zoo NA
base NA
boot NA
class NA
cluster NA
codetools NA
compiler NA
datasets NA
foreign NA
graphics NA
grDevices NA
grid NA
KernSmooth NA
lattice NA
MASS NA
Matrix NA
methods NA
mgcv NA
nlme NA
nnet NA
parallel NA
rpart NA
spatial NA
splines NA
stats NA
stats4 NA
survival NA
tcltk NA
tools NA
translations NA
utils NA
Suggests
abind NA
ade4 "ade4TkGUI, adegraphics, adephylo, ape, CircStats, deldir,\nlattice, spdep, splancs, waveslim, progress, foreach, parallel,\ndoParallel, iterators"
adegenet "adespatial, pegas, hierfstat, akima, maps, spdep, splancs,\ntripack, testthat, poppr"
adegraphics "car, Guerry, knitr, markdown, pixmap, rmarkdown, spdep,\nsplancs"
adephylo NA
adespatial "knitr, ape, rmarkdown, betapart"
admisc "QCA (>= 3.7)"
affy "tkWidgets (>= 1.19.0), affydata, widgetTools, hgu95av2cdf"
affyio NA
annotate "hgu95av2.db, genefilter, Biostrings (>= 2.25.10), IRanges,\nrae230a.db, rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db,\norg.Mm.eg.db, humanCHRLOC, Rgraphviz, RUnit,"
AnnotationDbi "utils, hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db,\nRUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,\nreactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75,\nBiocStyle, knitr"
ape "gee, expm, igraph, phangorn, xml2"
aplot "ggtree"
ash NA
AsioHeaders NA
askpass "testthat"
assertthat "testthat, covr"
backports NA
base64enc NA
BH NA
bigassertr "testthat, covr"
bigparallelr "testthat, covr"
bigstatsr "bigmemory (>= 4.5.33), bigreadr (>= 0.2), covr, data.table,\ndplyr, glmnet, hexbin, memuse, ModelMetrics, plotly, ppcor,\nRhpcBLASctl, spelling (>= 1.2), testthat"
Biobase "tools, tkWidgets, ALL, RUnit, golubEsets, BiocStyle, knitr"
BiocFileCache "testthat, knitr, BiocStyle, rmarkdown, rtracklayer"
BiocGenerics "Biobase, S4Vectors, IRanges, GenomicRanges, DelayedArray,\nBiostrings, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2,\nflowClust, MSnbase, annotate, RUnit"
BiocIO "testthat, knitr, rmarkdown, BiocStyle"
BiocManager "BiocVersion, BiocStyle, remotes, rmarkdown, testthat, withr,\ncurl, knitr"
BiocParallel "BiocGenerics, tools, foreach, BBmisc, doParallel,\nGenomicRanges, RNAseqData.HNRNPC.bam.chr14,\nTxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,\nRsamtools, GenomicAlignments, ShortRead, RUnit, BiocStyle,\nknitr, batchtools, data.table"
BiocStyle "BiocGenerics, RUnit, htmltools"
BiocVersion NA
biomaRt "BiocStyle, knitr, mockery, rmarkdown, testthat, webmockr"
biostat "covr, data.table, Hmisc, PMCMR, QuantPsyc, rcompanion,\nscales, testthat"
Biostrings "BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=\n1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),\nBSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe,\nhgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy\n(>= 1.41.3), affydata (>= 1.11.5), RUnit, BiocStyle, knitr"
bit "testthat (>= 3.0.0), roxygen2, knitr, markdown, rmarkdown,\nmicrobenchmark, bit64 (>= 4.0.0), ff (>= 4.0.0)"
bit64 "testthat (>= 3.0.3), withr"
bitops NA
bladderbatch NA
blob "covr, crayon, pillar (>= 1.2.1), testthat"
bookdown "bslib (>= 0.2.4), downlit (>= 0.4.0), htmlwidgets, jsonlite,\ncurl, rstudioapi, miniUI, rsconnect (>= 0.4.3), servr (>=\n0.13), shiny, tibble, testit (>= 0.9), tufte, xml2, webshot,\ntestthat (>= 3.1.0), withr (>= 2.3.0)"
boot "MASS, survival"
brew "testthat (>= 3.0.0)"
brio "covr, testthat (>= 3.0.0)"
broom "AER, AUC, bbmle, betareg (>= 3.2-1), biglm, binGroup, boot,\nbtergm (>= 1.10.6), car (>= 3.1-2), carData, caret, cluster,\ncmprsk, coda, covr, drc, e1071, emmeans, epiR, ergm (>=\n3.10.4), fixest (>= 0.9.0), gam (>= 1.15), gee, geepack,\nggplot2, glmnet, glmnetUtils, gmm, Hmisc, irlba, interp,\njoineRML, Kendall, knitr, ks, Lahman, lavaan (>= 0.6.18),\nleaps, lfe, lm.beta, lme4, lmodel2, lmtest (>= 0.9.38),\nlsmeans, maps, margins, MASS, mclust, mediation, metafor, mfx,\nmgcv, mlogit, modeldata, modeltests (>= 0.1.6), muhaz,\nmultcomp, network, nnet, ordinal, plm, poLCA, psych, quantreg,\nrmarkdown, robust, robustbase, rsample, sandwich, spdep (>=\n1.1), spatialreg, speedglm, spelling, survey, survival (>=\n3.6-4), systemfit, testthat (>= 3.0.0), tseries, vars, zoo"
bslib "bsicons, curl, fontawesome, future, ggplot2, knitr, magrittr,\nrappdirs, rmarkdown (>= 2.7), shiny (> 1.8.1), testthat,\nthematic, tools, utils, withr, yaml"
cachem "testthat"
Cairo "png"
callr "asciicast (>= 2.3.1), cli (>= 1.1.0), mockery, ps, rprojroot,\nspelling, testthat (>= 3.2.0), withr (>= 2.3.0)"
car "alr4, boot, coxme, effects, knitr, leaps, lmtest, Matrix,\nMatrixModels, ordinal, plotrix, mvtnorm, rgl (>= 0.111.3), rio,\nsandwich, SparseM, survival, survey"
carData "car (>= 3.0-0)"
caret "BradleyTerry2, covr, Cubist, dplyr, earth (>= 2.2-3),\nellipse, fastICA, gam (>= 1.15), ipred, kernlab, klaR, knitr,\nMASS, Matrix, mda, mgcv, mlbench, MLmetrics, nnet, pamr, party\n(>= 0.9-99992), pls, proxy, randomForest, RANN, rmarkdown,\nrpart, spls, superpc, testthat (>= 0.9.1), themis (>= 0.1.3)"
caTools "MASS, rpart"
cellranger "covr, testthat (>= 1.0.0), knitr, rmarkdown"
checkmate "R6, fastmatch, data.table (>= 1.9.8), devtools, ggplot2,\nknitr, magrittr, microbenchmark, rmarkdown, testthat (>=\n3.0.4), tinytest (>= 1.1.0), tibble"
classInt "spData (>= 0.2.6.2), units, knitr, rmarkdown, tinytest"
cli "callr, covr, crayon, digest, glue (>= 1.6.0), grDevices,\nhtmltools, htmlwidgets, knitr, methods, mockery, processx, ps\n(>= 1.3.4.9000), rlang (>= 1.0.2.9003), rmarkdown, rprojroot,\nrstudioapi, testthat, tibble, whoami, withr"
clipr "covr, knitr, rmarkdown, rstudioapi (>= 0.5), testthat (>=\n2.0.0)"
clock "covr, knitr, magrittr, pillar, rmarkdown, slider (>= 0.3.0),\ntestthat (>= 3.0.0), withr"
clue "e1071, lpSolve (>= 5.5.7), quadprog (>= 1.4-8), relations"
cluster "MASS, Matrix"
clusterProfiler "AnnotationHub, knitr, jsonlite, readr, rmarkdown,\norg.Hs.eg.db, prettydoc, BiocManager, testthat"
codetools NA
coin "xtable, e1071, vcd, TH.data (>= 1.0-7)"
collections "testthat (>= 2.3.1)"
colorspace "datasets, utils, KernSmooth, MASS, kernlab, mvtnorm, vcd,\ntcltk, shiny, shinyjs, ggplot2, dplyr, scales, grid, png, jpeg,\nknitr, rmarkdown, RColorBrewer, rcartocolor, scico, viridis,\nwesanderson"
colourpicker "knitr (>= 1.7), rmarkdown, rstudioapi (>= 0.5),\nshinydisconnect"
commonmark "curl, testthat, xml2"
conflicted "callr, covr, dplyr, Matrix, methods, pkgload, testthat (>=\n3.0.0), withr"
contrast "knitr, kableExtra, dplyr, ggplot2, tidyr, rmarkdown,\ntestthat, covr, geepack, splines"
corpcor ""
corrplot "seriation, knitr, RColorBrewer, rmarkdown, magrittr,\nprettydoc, testthat"
covr "R6, curl, knitr, rmarkdown, htmltools, DT (>= 0.2), testthat,\nrlang, rstudioapi (>= 0.2), xml2 (>= 1.0.0), parallel, memoise,\nmockery, covr"
cowplot "Cairo, covr, dplyr, forcats, gridGraphics (>= 0.4-0), knitr,\nlattice, magick, maps, PASWR, patchwork, rmarkdown, ragg,\ntestthat (>= 1.0.0), tidyr, vdiffr (>= 0.3.0), VennDiagram"
cpp11 "bench, brio, callr, cli, covr, decor, desc, ggplot2, glue,\nknitr, lobstr, mockery, progress, rmarkdown, scales, Rcpp,\ntestthat (>= 3.2.0), tibble, utils, vctrs, withr"
crayon "mockery, rstudioapi, testthat, withr"
credentials "testthat, knitr, rmarkdown"
crmn NA
crosstalk "shiny, ggplot2, testthat (>= 2.1.0), sass, bslib"
crul "testthat, roxygen2 (>= 7.1.1), fauxpas (>= 0.1.0), webmockr\n(>= 0.1.0), knitr, rmarkdown"
curl "spelling, testthat (>= 1.0.0), knitr, jsonlite, later,\nrmarkdown, httpuv (>= 1.4.4), webutils"
CustomSelection NA
cyclocomp "testthat"
data.table "bit64 (>= 4.0.0), bit (>= 4.0.4), R.utils, xts, zoo (>=\n1.8-1), yaml, knitr, markdown"
data.tree "Formula, graphics, testthat, knitr, rmarkdown, ape, yaml,\nnetworkD3, jsonlite, treemap, party, partykit, doParallel,\nforeach, htmlwidgets, DiagrammeR (>= 1.0.0), mockery, rpart"
DBI "arrow, blob, covr, DBItest, dbplyr, downlit, dplyr, glue,\nhms, knitr, magrittr, nanoarrow (>= 0.3.0.1), RMariaDB,\nrmarkdown, rprojroot, RSQLite (>= 1.1-2), testthat (>= 3.0.0),\nvctrs, xml2"
dbplyr "bit64, covr, knitr, Lahman, nycflights13, odbc (>= 1.4.2),\nRMariaDB (>= 1.2.2), rmarkdown, RPostgres (>= 1.4.5),\nRPostgreSQL, RSQLite (>= 2.3.1), testthat (>= 3.1.10)"
DelayedArray "BiocParallel, HDF5Array (>= 1.17.12), genefilter,\nSummarizedExperiment, airway, lobstr, DelayedMatrixStats,\nknitr, rmarkdown, BiocStyle, RUnit"
deldir "polyclip"
dendextend "knitr, rmarkdown, testthat, seriation, colorspace, ape,\nmicrobenchmark, gplots, heatmaply, dynamicTreeCut, pvclust,\ncorrplot, DendSer, MASS, cluster, fpc, circlize (>= 0.2.5),\ncovr"
Deriv "testthat (>= 0.11.0)"
desc "callr, covr, gh, spelling, testthat, whoami, withr"
DescTools "RDCOMClient, tcltk, VGAM, R.rsp, testthat (>= 3.0.0)"
DESeq2 "testthat, knitr, rmarkdown, vsn, pheatmap, RColorBrewer,\napeglm, ashr, tximport, tximeta, tximportData, readr, pbapply,\nairway, pasilla (>= 0.2.10), glmGamPoi, BiocManager"
devtools "BiocManager (>= 1.30.18), callr (>= 3.7.1), covr (>= 3.5.1),\ncurl (>= 4.3.2), digest (>= 0.6.29), DT (>= 0.23), foghorn (>=\n1.4.2), gh (>= 1.3.0), gmailr (>= 1.0.1), httr (>= 1.4.3),\nknitr (>= 1.39), lintr (>= 3.0.0), MASS, mockery (>= 0.4.3),\npingr (>= 2.0.1), rhub (>= 1.1.1), rmarkdown (>= 2.14),\nrstudioapi (>= 0.13), spelling (>= 2.2)"
diagram NA
diffobj "knitr, rmarkdown"
digest "tinytest, simplermarkdown"
doBy "geepack, knitr, lme4, markdown, multcomp, pbkrtest (>=\n0.5.2), survival, testthat (>= 2.1.0)"
doParallel "caret, mlbench, rpart, RUnit"
DOSE "prettydoc, clusterProfiler, gson (>= 0.0.5), knitr,\nrmarkdown, org.Hs.eg.db, MPO.db, HPO.db, testthat"
downlit "covr, htmltools, jsonlite, MASS, MassSpecWavelet, pkgload,\nrmarkdown, testthat (>= 3.0.0), xml2"
downloader "testthat"
dplyr "bench, broom, callr, covr, DBI, dbplyr (>= 2.2.1), ggplot2,\nknitr, Lahman, lobstr, microbenchmark, nycflights13, purrr,\nrmarkdown, RMySQL, RPostgreSQL, RSQLite, stringi (>= 1.7.6),\ntestthat (>= 3.1.5), tidyr (>= 1.3.0), withr"
dslabs NA
DT "knitr (>= 1.8), rmarkdown, shiny (>= 1.6), bslib, future,\ntestit, tibble"
dtplyr "bench, covr, knitr, rmarkdown, testthat (>= 3.1.2), tidyr (>=\n1.1.0), waldo (>= 0.3.1)"
dunn.test NA
e1071 "cluster, mlbench, nnet, randomForest, rpart, SparseM, xtable,\nMatrix, MASS, slam"
earth "gam (>= 1.20), mgcv (>= 1.8-26), mda (>= 0.5-2), MASS (>=\n7.3-51)"
edgeR "jsonlite, readr, rhdf5, splines, knitr, AnnotationDbi,\nBiobase, BiocStyle, SummarizedExperiment, org.Hs.eg.db, Matrix,\nSeuratObject"
ellipse "MASS"
ellipsis "covr, testthat"
embroidr NA
emmeans "bayesplot, bayestestR, biglm, brms, car, coda (>= 0.17),\ncompositions, ggplot2, lattice, logspline, mediation, mgcv,\nmultcomp, multcompView, nlme, ordinal (>= 2014.11-12), pbkrtest\n(>= 0.4-1), lme4, lmerTest (>= 2.0.32), MASS, MuMIn, rsm,\nknitr, rmarkdown, sandwich, scales, splines, testthat, tibble,\nxtable (>= 1.8-2)"
enrichplot "clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown,\norg.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi,\nggplotify, ggridges, grDevices, gridExtra, ggrepel (>= 0.9.0),\nggstar, scales, ggtreeExtra, tidydr"
entropy ""
estimability "knitr, rmarkdown"
evaluate "callr, covr, ggplot2 (>= 3.3.6), lattice, methods, pkgload,\nragg (>= 1.4.0), rlang (>= 1.1.5), knitr, testthat (>= 3.0.0),\nwithr"
Exact "ExactData"
expm "RColorBrewer, sfsmisc, Rmpfr"
expsmooth NA
extrafont "fontcm"
extrafontdb NA
fansi "unitizer, knitr, rmarkdown"
farver "covr, testthat (>= 3.0.0)"
fastmap "testthat (>= 2.1.1)"
fastmatch NA
feather "testthat"
ff "biglm, testthat (>= 0.11.0), markdown"
fgsea "testthat, knitr, rmarkdown, reactome.db, AnnotationDbi,\nparallel, org.Mm.eg.db, limma, GEOquery, msigdbr, aggregation,\nSeurat"
filelock "callr (>= 2.0.0), covr, testthat (>= 3.0.0)"
fitdistrplus "actuar, rgenoud, mc2d, gamlss.dist, knitr, ggplot2,\nGeneralizedHyperbolic, rmarkdown, Hmisc, bookdown"
flock NA
fma "knitr, rmarkdown, ggplot2, dplyr"
fontawesome "covr, dplyr (>= 1.0.8), gt (>= 0.9.0), knitr (>= 1.31),\ntestthat (>= 3.0.0), rsvg"
forcats "covr, dplyr, ggplot2, knitr, readr, rmarkdown, testthat (>=\n3.0.0), withr"
foreach "randomForest, doMC, doParallel, testthat, knitr, rmarkdown"
forecast "forecTheta, knitr, methods, rmarkdown, rticles, scales,\nseasonal, testthat (>= 3.0.0), uroot"
forestplot "dplyr, Gmisc, Greg, knitr, purrr, rlang, rmarkdown, rmeta,\nrms, testthat, tibble, tidyr, tidyselect, tidyverse"
formatR "rstudioapi, shiny, testit, rmarkdown, knitr"
Formula NA
fpp2 "GGally,gridExtra,Mcomp,seasonal,vars"
fracdiff "longmemo, forecast, urca"
fs "covr, crayon, knitr, pillar (>= 1.0.0), rmarkdown, spelling,\ntestthat (>= 3.0.0), tibble (>= 1.1.0), vctrs (>= 0.3.0), withr"
FSA "DescTools, dplyr, fishmethods, FSAdata, knitr, marked, nlme,\nnlstools, pkgdown, plyr, psych, Rcapture, rmarkdown, testthat\n(>= 3.0.0), tibble, tidyr, covr"
furrr "carrier, covr, dplyr (>= 0.7.4), knitr, listenv (>= 0.6.0),\nmagrittr, rmarkdown, testthat (>= 3.0.0), tidyselect, withr"
futile.logger "testthat, jsonlite"
futile.options NA
future "methods, RhpcBLASctl, R.rsp, markdown"
future.apply "datasets, stats, tools, listenv (>= 0.8.0), R.rsp, markdown"
gapminder "dplyr, ggplot2 (>= 3.0.0), knitr, rmarkdown, testthat (>=\n3.0.0)"
gargle "aws.ec2metadata, aws.signature, covr, httpuv, knitr,\nrmarkdown, sodium, spelling, testthat (>= 3.1.7)"
gaston "knitr, RcppEigen"
gee "MASS"
geepack NA
genefilter "class, hgu95av2.db, tkWidgets, ALL, ROC, RColorBrewer,\nBiocStyle, knitr"
genepop "testthat, knitr, shiny"
generics "covr, pkgload, testthat (>= 3.0.0), tibble, withr"
GenomeInfoDb "R.utils, data.table, GenomicRanges, Rsamtools,\nGenomicAlignments, GenomicFeatures, BSgenome,\nTxDb.Dmelanogaster.UCSC.dm3.ensGene,\nBSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,\nBSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr"
GenomeInfoDbData NA
GenomicAlignments "ShortRead, rtracklayer, BSgenome, GenomicFeatures,\nRNAseqData.HNRNPC.bam.chr14, pasillaBamSubset,\nTxDb.Hsapiens.UCSC.hg19.knownGene,\nTxDb.Dmelanogaster.UCSC.dm3.ensGene,\nBSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Hsapiens.UCSC.hg19,\nDESeq2, edgeR, RUnit, BiocStyle"
GenomicFeatures "RMariaDB, org.Mm.eg.db, org.Hs.eg.db, BSgenome,\nBSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17),\nBSgenome.Celegans.UCSC.ce11, BSgenome.Dmelanogaster.UCSC.dm3\n(>= 1.3.17), mirbase.db, FDb.UCSC.tRNAs,\nTxDb.Hsapiens.UCSC.hg19.knownGene,\nTxDb.Celegans.UCSC.ce11.ensGene,\nTxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1),\nTxDb.Mmusculus.UCSC.mm10.knownGene (>= 3.4.7),\nTxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,\nTxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.4.6),\nSNPlocs.Hsapiens.dbSNP144.GRCh38, Rsamtools, pasillaBamSubset\n(>= 0.0.5), GenomicAlignments (>= 1.15.7), ensembldb,\nAnnotationFilter, RUnit, BiocStyle, knitr, markdown"
GenomicRanges "Matrix, Biobase, AnnotationDbi, annotate, Biostrings (>=\n2.25.3), SummarizedExperiment (>= 0.1.5), Rsamtools (>=\n1.13.53), GenomicAlignments, rtracklayer, BSgenome,\nGenomicFeatures, Gviz, VariantAnnotation, AnnotationHub,\nDESeq2, DEXSeq, edgeR, KEGGgraph, RNAseqData.HNRNPC.bam.chr14,\npasillaBamSubset, KEGGREST, hgu95av2.db, hgu95av2probe,\nBSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Hsapiens.UCSC.hg19,\nBSgenome.Mmusculus.UCSC.mm10,\nTxDb.Athaliana.BioMart.plantsmart22,\nTxDb.Dmelanogaster.UCSC.dm3.ensGene,\nTxDb.Hsapiens.UCSC.hg19.knownGene,\nTxDb.Mmusculus.UCSC.mm10.knownGene, RUnit, digest, knitr,\nrmarkdown, BiocStyle"
genstats "knitr, devtools"
geodata "jsonlite, R.utils, httr, archive"
gert "spelling, knitr, rmarkdown, testthat"
GetoptLong "testthat (>= 1.0.0), knitr, markdown, rmarkdown"
ggalt "testthat, gridExtra, knitr, rmarkdown, ggthemes, reshape2"
ggExtra "knitr (>= 1.7), rmarkdown, rstudioapi (>= 0.5), testthat,\nvdiffr, fontquiver, svglite, withr, devtools"
ggforce "sessioninfo, concaveman, deldir, latex2exp, reshape2, units\n(>= 0.4-6), covr"
ggfortify "testthat, cluster, changepoint, fGarch, forecast, ggrepel,\nglmnet, grDevices, KFAS, knitr, lintr, mapdata, markdown, MASS,\nMSwM, nlme, raster, ROCR, sp, stats, strucchange, survival,\ntimeSeries, tseries, utils, vars, xts, zoo, lfda"
ggfun "ggplotify, knitr, rmarkdown, prettydoc, tidyr, ggnewscale"
ggmsa "ggtreeExtra, ape, cowplot, knitr, BiocStyle, rmarkdown,\nreadxl, ggnewscale, kableExtra, gggenes, testthat (>= 3.0.0)"
ggnewscale "testthat, vdiffr, covr"
ggplot2 "covr, dplyr, ggplot2movies, hexbin, Hmisc, knitr, mapproj,\nmaps, multcomp, munsell, nlme, profvis, quantreg, ragg (>=\n1.2.6), RColorBrewer, rmarkdown, rpart, sf (>= 0.7-3), svglite\n(>= 2.1.2), testthat (>= 3.1.2), vdiffr (>= 1.0.6), xml2"
ggplotify "aplot, colorspace, cowplot, ggimage, knitr, rmarkdown,\nlattice, prettydoc, vcd, utils"
ggpolypath "rmarkdown, knitr"
ggpubr "grDevices, knitr, RColorBrewer, gtable, testthat"
ggraph "network, knitr, rmarkdown, purrr, tibble, seriation, deldir,\ngganimate, covr, sf, sfnetworks"
ggrepel "knitr, rmarkdown, testthat, svglite, vdiffr, gridExtra, ggpp,\npatchwork, devtools, prettydoc, ggbeeswarm, dplyr, magrittr,\nreadr, stringr"
ggsci "gridExtra, knitr, ragg, rmarkdown"
ggsignif "knitr, rmarkdown, testthat, vdiffr (>= 1.0.2)"
ggspatial "prettymapr, knitr, rmarkdown, sp, raster, terra, testthat (>=\n3.0.0), dplyr, withr, ggrepel, stars, covr, vdiffr, lwgeom"
ggtext "cowplot, dplyr, glue, knitr, rmarkdown, testthat, vdiffr"
ggtranscript "BiocStyle, covr, ggpubr, knitr, rmarkdown, rtracklayer,\nsessioninfo, testthat (>= 3.0.0), vdiffr"
ggtree "emojifont, ggimage, ggplotify, shadowtext, grDevices, knitr,\nprettydoc, rmarkdown, testthat, tibble, glue"
ggvenn NA
gh "covr, knitr, mockery, rmarkdown, rprojroot, spelling,\ntestthat (>= 3.0.0), withr"
gitcreds "codetools, covr, knitr, mockery, oskeyring, rmarkdown,\ntestthat (>= 3.0.0), withr"
glasso NA
gld ""
GlobalAncova "GO.db, golubEsets, hu6800.db, vsn, Rgraphviz"
GlobalOptions "testthat (>= 1.0.0), knitr, markdown, GetoptLong, rmarkdown"
globals NA
globaltest "vsn, golubEsets, KEGGREST, hu6800.db, Rgraphviz, GO.db,\nlungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS,\nboot, rpart, mstate"
glue "crayon, DBI (>= 1.2.0), dplyr, knitr, magrittr, rlang,\nrmarkdown, RSQLite, testthat (>= 3.2.0), vctrs (>= 0.3.0),\nwaldo (>= 0.5.3), withr"
Gmisc "datasets, dplyr, jsonlite, testthat, tidyselect"
GO.db "DBI"
googledrive "curl, dplyr (>= 1.0.0), knitr, mockr, rmarkdown, spelling,\ntestthat (>= 3.1.3)"
googlesheets4 "readr, rmarkdown, spelling, testthat (>= 3.1.7)"
GOSemSim "AnnotationHub, BiocManager, clusterProfiler, DOSE, knitr,\nreadr, rmarkdown, org.Hs.eg.db, prettydoc, testthat, tidyr,\ntidyselect, ROCR"
gower "tinytest (>= 0.9.3),"
GPArotation NA
gplots "grid, MASS, knitr, rmarkdown, r2d2, nlme"
graph "SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle,\nknitr"
graphlayouts "testthat, ggplot2, uwot, oaqc"
gridBase "lattice"
gridExtra "ggplot2, egg, lattice, knitr, testthat"
gridGraphics "magick (>= 1.3), pdftools (>= 1.6)"
gridtext "covr, knitr, rmarkdown, testthat, vdiffr"
GSEABase "hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools,\ntestthat, BiocStyle, knitr, RUnit"
gson NA
gtable "covr, ggplot2, knitr, profvis, rmarkdown, testthat (>= 3.0.0)"
gtools "car, gplots, knitr, rstudioapi, SGP, taxize"
hardhat "covr, crayon, devtools, knitr, Matrix, modeldata (>= 0.0.2),\nrecipes (>= 1.0.5), rmarkdown (>= 2.3), roxygen2, testthat (>=\n3.0.0), usethis (>= 2.1.5), withr (>= 3.0.0)"
haven "covr, crayon, fs, knitr, pillar (>= 1.4.0), rmarkdown,\ntestthat (>= 3.0.0), utf8"
HDO.db "rmarkdown, knitr, testthat (>= 3.0.0)"
hierfstat "ape, pegas, knitr, rmarkdown, testthat"
highr "knitr, markdown, testit"
HistData "gtools, KernSmooth, maps, ggplot2, dplyr, scales, proto,\ngrid, reshape, plyr, lattice, jpeg, car, gplots, sp, heplots,\nknitr, rmarkdown, effects, lubridate, gridExtra, vcd, MASS,\nforcats"
Hmisc "survival, qreport, acepack, chron, rms, mice, rstudioapi,\ntables, plotly (>= 4.5.6), rlang, plyr, VGAM, leaps, pcaPP,\ndigest, parallel, polspline, abind, kableExtra, rio, lattice,\nlatticeExtra, gt, sparkline, jsonlite, htmlwidgets, qs,\ngetPass, keyring, safer, htm2txt"
hms "crayon, lubridate, pillar (>= 1.1.0), testthat (>= 3.0.0)"
hoardr "testthat, knitr, rmarkdown"
htmlTable "testthat, XML, xml2, Hmisc, rmarkdown, chron, lubridate,\ntibble, purrr, tidyselect, glue, rlang, tidyr (>= 0.7.2), dplyr\n(>= 0.7.4)"
htmltools "Cairo, markdown, ragg, shiny, testthat, withr"
htmlwidgets "testthat"
httpcode "testthat"
httpuv "callr, curl, testthat, websocket"
httr "covr, httpuv, jpeg, knitr, png, readr, rmarkdown, testthat\n(>= 0.8.0), xml2"
httr2 "askpass, bench, clipr, covr, docopt, httpuv, jose, jsonlite,\nknitr, later (>= 1.4.0), paws.common, promises, rmarkdown,\ntestthat (>= 3.1.8), tibble, webfakes, xml2"
ids "knitr, rcorpora, rmarkdown, testthat"
igraph "ape (>= 5.7-0.1), callr, decor, digest, igraphdata, knitr,\nrgl (>= 1.3.14), rmarkdown, scales, stats4, tcltk, testthat,\nvdiffr, withr"
impute NA
ini "testthat"
interp "sp, Deriv, Ryacas, ggplot2, gridExtra, lattice, stringi,\nstringr, scatterplot3d, MASS"
ipred "mvtnorm, mlbench, TH.data, randomForest, party"
IRanges "XVector, GenomicRanges, Rsamtools, GenomicAlignments,\nGenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,\nRUnit, BiocStyle"
isoband "covr, ggplot2, knitr, magick, microbenchmark, rmarkdown, sf,\ntestthat, xml2"
iterators "RUnit, foreach"
jpeg NA
jquerylib "testthat"
jsonlite "httr, vctrs, testthat, knitr, rmarkdown, R.rsp, sf"
kableExtra "testthat, magick, tinytex, formattable, sparkline, webshot2"
KEGGgraph "RBGL, testthat, RColorBrewer, org.Hs.eg.db, hgu133plus2.db,\nSPIA"
KEGGREST "RUnit, BiocGenerics, knitr, markdown"
KernSmooth "MASS, carData"
knitr "bslib, codetools, DBI (>= 0.4-1), digest, formatR, gifski,\ngridSVG, htmlwidgets (>= 0.7), jpeg, JuliaCall (>= 0.11.1),\nmagick, litedown, markdown (>= 1.3), png, ragg, reticulate (>=\n1.4), rgl (>= 0.95.1201), rlang, rmarkdown, sass, showtext,\nstyler (>= 1.2.0), targets (>= 0.6.0), testit, tibble,\ntikzDevice (>= 0.10), tinytex (>= 0.56), webshot, rstudioapi,\nsvglite"
labeling NA
lambda.r "testit"
languageserver "covr (>= 3.4.0), magrittr (>= 1.5), mockery (>= 0.4.2),\npacman, processx (>= 3.4.1), purrr (>= 0.3.3), testthat (>=\n2.1.0), withr (>= 2.3.0), rmarkdown (>= 2.0)"
later "knitr, nanonext, R6, rmarkdown, testthat (>= 2.1.0)"
lattice "KernSmooth, MASS, latticeExtra, colorspace"
latticeExtra "maps, mapproj, deldir, quantreg, zoo, mgcv"
lava "KernSmooth, Rgraphviz, data.table, ellipse, fields, geepack,\ngraph, knitr, rmarkdown, igraph (>= 0.6), lavaSearch2, lme4 (>=\n1.1.35.1), MASS, Matrix (>= 1.6.3), mets (>= 1.1), nlme,\noptimx, polycor, quantreg, rgl, targeted (>= 0.4), testthat (>=\n0.11), visNetwork"
lazyeval "knitr, rmarkdown (>= 0.2.65), testthat, covr"
libcoin "coin"
lifecycle "covr, crayon, knitr, lintr, rmarkdown, testthat (>= 3.0.1),\ntibble, tidyverse, tools, vctrs, withr"
limma "BiasedUrn, ellipse, gplots, knitr, locfit, MASS, splines,\naffy, AnnotationDbi, Biobase, BiocStyle, GO.db, illuminaio,\norg.Hs.eg.db, vsn"
lintr "bookdown, crayon, httr (>= 1.2.1), jsonlite, mockery,\npatrick, rlang, rmarkdown, rstudioapi (>= 0.2), testthat (>=\n3.1.5), tibble, tufte, withr (>= 2.5.0)"
listenv "R.utils, R.rsp, markdown"
lme4 "knitr, rmarkdown, MEMSS, testthat (>= 0.8.1), ggplot2,\nmlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, HSAUR3,\nnumDeriv, car, dfoptim, mgcv, statmod, rr2, semEff, tibble,\nmerDeriv"
lmom NA
lmtest "car, strucchange, sandwich, dynlm, stats4, survival, AER"
locfit "interp, gam"
lsmeans ""
lubridate "covr, knitr, rmarkdown, testthat (>= 2.1.0), vctrs (>= 0.6.5)"
magrittr "covr, knitr, rlang, rmarkdown, testthat"
MALDIquant "knitr, testthat (>= 0.8)"
maps "mapproj (>= 1.2-0), mapdata (>= 2.3.0), sp, rnaturalearth"
markdown "knitr, rmarkdown (>= 2.18), yaml, RCurl"
MatrixGenerics "Matrix, sparseMatrixStats, SparseArray, DelayedArray,\nDelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0)"
MatrixModels NA
matrixStats "utils, base64enc, ggplot2, knitr, markdown, microbenchmark,\nR.devices, R.rsp"
mclust "knitr (>= 1.4), rmarkdown (>= 2.10), mix (>= 1.0), geometry\n(>= 0.4), MASS"
memoise "digest, aws.s3, covr, googleAuthR, googleCloudStorageR, httr,\ntestthat"
memuse NA
MetaboAnalystR "graph, htmltools, pls, ellipse, scatterplot3d, randomForest,\ncaTools, e1071, som, RJSONIO, rjson, ROCR, globaltest,\nGlobalAncova, Rgraphviz, preprocessCore, genefilter, pheatmap,\nsva, limma, fitdistrplus, lars, Hmisc, magrittr, xtable,\nKEGGgraph, metap, entropy, rsm, httr, knitr, rmarkdown,\ndevtools, testthat, visNetwork, ggraph, RSclient, car, gdata,\nhuge, ppcor, ctc, OptiLCMS"
microbenchmark "ggplot2, multcomp, RUnit"
mime NA
miniUI NA
minpack.lm "MASS"
minqa NA
mmod "testthat"
mnormt NA
mockr "covr, fs, knitr, pkgload, rmarkdown, testthat, usethis"
ModelMetrics "testthat"
modelr "compiler, covr, ggplot2, testthat (>= 3.0.0)"
modeltools NA
msa "Biobase, knitr, seqinr, ape (>= 5.1), phangorn"
MsCoreUtils "testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD,\nimpute, norm, pcaMethods, vsn, Matrix, preprocessCore,\nmissForest"
MSnbase "testthat, pryr, gridExtra, microbenchmark, zoo, knitr (>=\n1.1.0), rols, Rdisop, pRoloc, pRolocdata (>= 1.7.1), msdata (>=\n0.19.3), roxygen2, rgl, rpx, AnnotationHub, BiocStyle (>=\n2.5.19), rmarkdown, imputeLCMD, norm, gplots, shiny, magrittr,\nSummarizedExperiment"
mtbls2 "xcms (>= 3.13.8), CAMERA, Risa (>= 1.0.0), knitr, Heatplus,\npcaMethods, sp, rmarkdown"
multcomp "lme4 (>= 0.999375-16), nlme, robustbase, coin, MASS, foreign,\nxtable, lmtest, coxme (>= 2.2-1), SimComp, ISwR, tram (>=\n0.2-5), fixest (>= 0.10), glmmTMB"
multcompView "multcomp, pgirmess, MASS"
multtest "snow"
munsell "ggplot2, testthat"
mvtnorm "qrng, numDeriv"
mzID "knitr, testthat"
mzR "msdata (>= 0.15.1), RUnit, mzID, BiocStyle (>= 2.5.19),\nknitr, XML, rmarkdown"
natserv "testthat, knitr, vcr"
ncdf4 NA
networkD3 "htmltools (>= 0.2.6), jsonlite,"
nloptr "knitr, rmarkdown, covr, tinytest"
nortest NA
numDeriv NA
onekp "testthat, covr, knitr, rmarkdown"
openssl "curl, testthat (>= 2.1.0), digest, knitr, rmarkdown,\njsonlite, jose, sodium"
openxlsx "curl, formula.tools, knitr, rmarkdown, testthat"
OptiLCMS "knitr (>= 1.1.0), MALDIquant, MassSpecWavelet, mtbls2,\nrmarkdown, BiocStyle"
pagedown "promises, testit, xaringan, pdftools, revealjs, covr, xml2"
pander "grid, lattice, ggplot2 (>= 0.9.2), sylly, sylly.en, logger,\nsurvival, microbenchmark, zoo, nlme, descr, MASS, knitr,\nrmarkdown, tables, reshape, memisc, Epi, randomForest, tseries,\ngtable, rms, forecast, data.table"
pandoc "covr, gh, rmarkdown (>= 2.14), testthat (>= 3.0.0), tibble,\nwithr"
parallelly "commonmark, base64enc"
patchwork "knitr, rmarkdown, gridGraphics, gridExtra, ragg, testthat (>=\n2.1.0), vdiffr, covr, png, gt (>= 0.11.0)"
pbapply "shiny, future, future.apply"
pbkrtest "markdown, knitr"
pcaMethods "matrixStats, lattice, ggplot2"
pegas "rgl, snpStats, adegenet"
permute "vegan (>= 2.0-0), testthat (>= 0.5), parallel, knitr,\nrmarkdown, bookdown, sessioninfo"
phangorn "apex, Biostrings, ggseqlogo, ggplot2, knitr, magick, rgl,\nrmarkdown, seqinr, testthat (>= 3.0.0), tinytest, vdiffr,\nxtable"
phylobase "MASS, testthat (>= 0.8.1), knitr, rmarkdown"
pillar "bit64, DBI, debugme, DiagrammeR, dplyr, formattable, ggplot2,\nknitr, lubridate, nanotime, nycflights13, palmerpenguins,\nrmarkdown, scales, stringi, survival, testthat (>= 3.1.1),\ntibble, units (>= 0.7.2), vdiffr, withr"
pinfsc50 NA
pixmap NA
pkgbuild "covr, cpp11, knitr, Rcpp, rmarkdown, testthat (>= 3.2.0),\nwithr (>= 2.3.0)"
pkgconfig "covr, testthat, disposables (>= 1.0.3)"
pkgdown "covr, diffviewer, evaluate (>= 0.24.0), gert, gt, htmltools,\nhtmlwidgets, knitr, lifecycle, magick, methods, pkgload (>=\n1.0.2), quarto, rsconnect, rstudioapi, rticles, sass, testthat\n(>= 3.1.3), tools"
pkgload "bitops, jsonlite, mathjaxr, pak, Rcpp, remotes, rstudioapi,\ntestthat (>= 3.2.1.1), usethis"
plogr "Rcpp"
plotly "MASS, maps, hexbin, ggthemes, GGally, ggalluvial, testthat,\nknitr, shiny (>= 1.1.0), shinytest (>= 1.3.0), curl, rmarkdown,\nCairo, broom, webshot, listviewer, dendextend, sf, png,\nIRdisplay, processx, plotlyGeoAssets, forcats, withr,\npalmerpenguins, rversions, reticulate, rsvg"
plotmo "C50 (>= 0.1.0-24), earth (>= 5.1.2), gbm (>= 2.1.1), glmnet\n(>= 2.0.5), glmnetUtils (>= 1.0.3), MASS (>= 7.3-51), mlr (>=\n2.12.1), neuralnet (>= 1.33), partykit (>= 1.2-2), pre (>=\n0.5.0), rpart (>= 4.1-15), rpart.plot (>= 3.0.8)"
plotrix NA
pls "MASS, parallel, Rmpi, testthat, RUnit"
plyr "abind, covr, doParallel, foreach, iterators, itertools,\ntcltk, testthat"
png NA
polspline NA
polyclip NA
polynom "knitr, rmarkdown"
polysat "ade4, adegenet, ape"
PopGenHelpR "knitr, rmarkdown, testthat (>= 3.0.0)"
poppr "testthat, knitr, rmarkdown, poweRlaw, cowplot, RClone"
posterdown "knitr"
poweRlaw "covr, knitr, testthat"
pracma "NlcOptim, quadprog"
praise "testthat"
preprocessCore NA
prettyunits "codetools, covr, testthat"
pROC "microbenchmark, tcltk, MASS, logcondens, doParallel,\ntestthat, vdiffr, ggplot2, rlang"
processx "callr (>= 3.7.3), cli (>= 3.3.0), codetools, covr, curl,\ndebugme, parallel, rlang (>= 1.0.2), testthat (>= 3.0.0),\nwebfakes, withr"
prodlim NA
profvis "htmltools, knitr, rmarkdown, shiny, testthat (>= 3.0.0)"
progress "Rcpp, testthat (>= 3.0.0), withr"
progressr "graphics, tcltk, beepr, cli, crayon, pbmcapply, progress,\npurrr, foreach, plyr, doFuture, future, future.apply, furrr,\nntfy, RPushbullet, rstudioapi, shiny, commonmark, base64enc,\ntools"
proj4 NA
promises "future (>= 1.21.0), knitr, purrr, rmarkdown, spelling,\ntestthat, vembedr"
ProtGenerics "testthat"
proxy "cba"
ps "callr, covr, curl, pillar, pingr, processx (>= 3.1.0), R6,\nrlang, testthat (>= 3.0.0), webfakes, withr"
psych "psychTools, lavaan, lme4, Rcsdp, graph, knitr, Rgraphviz"
purrr "covr, dplyr (>= 0.7.8), httr, knitr, lubridate, rmarkdown,\ntestthat (>= 3.0.0), tibble, tidyselect"
qs "knitr, rmarkdown, testthat, dplyr, data.table"
quadprog NA
quantmod "DBI, RMySQL, RSQLite, timeSeries, xml2, downloader, tinytest"
quantreg "interp, rgl, logspline, nor1mix, Formula, zoo, R.rsp, conquer"
qvalue "knitr"
R.cache NA
R.methodsS3 "codetools"
R.oo "tools"
R.utils "datasets, digest (>= 0.6.10)"
R4RNA NA
R6 "lobstr, testthat (>= 3.0.0)"
rafalib NA
ragg "covr, graphics, grid, testthat (>= 3.0.0)"
randomForest "RColorBrewer, MASS"
RApiSerialize NA
rappdirs "roxygen2, testthat (>= 3.0.0), covr, withr"
ratelimitr "testthat, microbenchmark, knitr, rmarkdown, covr"
RBGL "Rgraphviz, XML, RUnit, BiocGenerics, BiocStyle, knitr"
rbibutils "testthat"
rcmdcheck "covr, knitr, mockery, processx, ps, rmarkdown, svglite,\ntestthat, webfakes"
RColorBrewer NA
rcompanion NA
Rcpp "tinytest, inline, rbenchmark, pkgKitten (>= 0.1.2)"
RcppArmadillo "tinytest, Matrix (>= 1.3.0), pkgKitten, reticulate, slam"
RcppEigen "Matrix, inline, tinytest, pkgKitten, microbenchmark"
RcppParallel "Rcpp, RUnit, knitr, rmarkdown"
RcppProgress "RcppArmadillo, devtools, roxygen2, testthat"
RCurl "XML"
Rdpack "grDevices, testthat, rstudioapi, rprojroot, gbRd"
readr "covr, curl, datasets, knitr, rmarkdown, spelling, stringi,\ntestthat (>= 3.2.0), tzdb (>= 0.1.1), waldo, withr, xml2"
readxl "covr, knitr, rmarkdown, testthat (>= 3.1.6), withr"
recipes "covr, ddalpha, dials (>= 1.2.0), ggplot2, igraph, kernlab,\nknitr, modeldata (>= 0.1.1), parsnip (>= 1.2.0), RANN,\nRcppRoll, rmarkdown, rpart, rsample, RSpectra, splines2,\ntestthat (>= 3.0.0), workflows, xml2"
reformulas "lme4, tinytest"
rematch "covr, testthat"
rematch2 "covr, testthat"
remotes "brew, callr, codetools, covr, curl, git2r (>= 0.23.0), knitr,\nmockery, pingr, pkgbuild (>= 1.0.1), rmarkdown, rprojroot,\ntestthat (>= 3.0.0), webfakes, withr"
rentrez "testthat, knitr, rmarkdown"
renv "BiocManager, cli, compiler, covr, cpp11, devtools, gitcreds,\njsonlite, jsonvalidate, knitr, miniUI, modules, packrat, pak,\nR6, remotes, reticulate, rmarkdown, rstudioapi, shiny,\ntestthat, uuid, waldo, yaml, webfakes"
reprex "covr, fortunes, miniUI, rprojroot, sessioninfo, shiny,\nspelling, styler (>= 1.2.0), testthat (>= 3.2.1)"
reshape2 "covr, lattice, testthat (>= 0.8.0)"
restfulr "getPass, rsolr, RUnit"
rex "covr, dplyr, ggplot2, Hmisc, knitr, magrittr, rmarkdown,\nroxygen2, rvest, stringr, testthat"
rgl "MASS, rmarkdown (>= 2.16), deldir (>= 1.0-4), orientlib,\nlattice, misc3d, magick, plotrix (>= 3.7-3), tripack, interp,\nalphashape3d, tcltk, js (>= 1.2), webshot2 (>= 0.1.0), downlit\n(>= 0.4.0), pkgdown (>= 2.0.0), extrafont, shiny,\nmanipulateWidget (>= 0.9.0), testthat, crosstalk, V8, chromote,\njpeg, png, markdown"
Rgraphviz "RUnit, BiocGenerics, XML"
Rhdf5lib "BiocStyle, knitr, rmarkdown, tinytest, mockery"
RhpcBLASctl NA
Rhtslib "knitr, rmarkdown, BiocStyle"
ritis "testthat, webmockr, vcr (>= 0.5.4)"
rjson NA
RJSONIO NA
rlang "cli (>= 3.1.0), covr, crayon, fs, glue, knitr, magrittr,\nmethods, pillar, rmarkdown, stats, testthat (>= 3.0.0), tibble,\nusethis, vctrs (>= 0.2.3), withr"
rmarkdown "digest, dygraphs, fs, rsconnect, downlit (>= 0.4.0), katex\n(>= 1.4.0), sass (>= 0.4.0), shiny (>= 1.6.0), testthat (>=\n3.0.3), tibble, vctrs, cleanrmd, withr (>= 2.4.2), xml2"
rmio "testthat (>= 3.0.0)"
rms "boot, tcltk, plotly (>= 4.5.6), mice, rmsb, nnet, VGAM,\nlattice"
rncl "testthat, ape"
RNeXML "spelling, rdflib, geiger (>= 2.0), phytools (>= 0.3.93),\nknitr (>= 1.5), rfigshare (>= 0.3.0), knitcitations (>= 1.0.1),\ntestthat (>= 0.10.0), rmarkdown (>= 0.3.3), xslt, covr,\ntaxalight, progress"
rootSolve NA
rosm "sp, plyr, raster, testthat (>= 3.0.0), withr, sf, terra,\nabind, methods, jsonlite, tiff, vdiffr"
rotl "knitr (>= 1.12), MCMCglmm, phylobase, readxl, rmarkdown (>=\n0.7), RNeXML, testthat"
roxygen2 "covr, R.methodsS3, R.oo, rmarkdown (>= 2.16), testthat (>=\n3.1.2), yaml"
rprojroot "covr, knitr, lifecycle, mockr, rlang, rmarkdown, testthat (>=\n3.0.0), withr"
rredlist "spelling, testthat, vcr (>= 0.6.0), knitr, rmarkdown,\nwebmockr, microbenchmark, ggplot2, dplyr, patchwork, vdiffr"
Rsamtools "GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,\nTxDb.Dmelanogaster.UCSC.dm3.ensGene,\nTxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,\nBSgenome.Hsapiens.UCSC.hg19, RUnit, BiocStyle, knitr"
Rserve "RSclient"
RSkittleBrewer "knitr, rmarkdown,"
rsm "emmeans (> 1.3.5.1), Vdgraph, conf.design, DoE.base, FrF2,\nknitr, rmarkdown"
RSpectra "knitr, rmarkdown, prettydoc"
RSQLite "callr, cli, DBItest (>= 1.8.0), decor, gert, gh, hms, knitr,\nmagrittr, rmarkdown, rvest, testthat (>= 3.0.0), withr, xml2"
rstatix "knitr, rmarkdown, ggpubr, graphics, emmeans, coin, boot,\ntestthat, spelling"
rstudioapi "testthat, knitr, rmarkdown, clipr, covr"
rtracklayer "BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),\ngenefilter, limma, org.Hs.eg.db, hgu133plus2.db,\nGenomicFeatures, BSgenome.Hsapiens.UCSC.hg19,\nTxDb.Hsapiens.UCSC.hg19.knownGene, RUnit"
Rttf2pt1 NA
rversions "covr, mockery, testthat"
rvest "chromote, covr, knitr, R6, readr, repurrrsive, rmarkdown,\nspelling, stringi (>= 0.3.1), testthat (>= 3.0.2), webfakes"
s2 "bit64, testthat (>= 3.0.0), vctrs"
S4Arrays "BiocParallel, SparseArray (>= 0.0.4), DelayedArray, testthat,\nknitr, rmarkdown, BiocStyle"
S4Vectors "IRanges, GenomicRanges, SummarizedExperiment, Matrix,\nDelayedArray, ShortRead, graph, data.table, RUnit, BiocStyle,\nknitr"
sandwich "AER, car, geepack, lattice, lme4, lmtest, MASS, multiwayvcov,\nparallel, pcse, plm, pscl, scatterplot3d, stats4, strucchange,\nsurvival"
sass "testthat, knitr, rmarkdown, withr, shiny, curl"
scales "bit64, covr, dichromat, ggplot2, hms (>= 0.5.0), stringi,\ntestthat (>= 3.0.0)"
scatterpie "knitr, rmarkdown, prettydoc, maps, scales, cli"
scrime "MASS, RSQLite (>= 0.4-15), oligoClasses (>= 1.1.9), DBI"
scriptName "testthat, devtools"
segmented NA
selectr "testthat, XML, xml2"
seqinr NA
seqmagick "downloader, knitr, rmarkdown, GenomicAlignments,\nGenomicRanges, IRanges, muscle, Rsamtools, prettydoc"
servr "tools, later, rstudioapi, knitr (>= 1.9), rmarkdown"
sessioninfo "callr, covr, mockery, reticulate, rmarkdown, testthat, withr"
sf "blob, nanoarrow, covr, dplyr (>= 1.0.0), ggplot2, knitr,\nlwgeom (>= 0.2-14), maps, mapview, Matrix, microbenchmark,\nodbc, pbapply, pillar, pool, raster, rlang, rmarkdown,\nRPostgres (>= 1.1.0), RPostgreSQL, RSQLite, sp (>= 1.2-4),\nspatstat (>= 2.0-1), spatstat.geom, spatstat.random,\nspatstat.linnet, spatstat.utils, stars (>= 0.6-0), terra,\ntestthat (>= 3.0.0), tibble (>= 1.4.1), tidyr (>= 1.2.0),\ntidyselect (>= 1.0.0), tmap (>= 2.0), vctrs, wk (>= 0.9.0)"
shadowtext "knitr, rmarkdown, prettydoc"
shape NA
shiny "coro (>= 1.1.0), datasets, DT, Cairo (>= 1.5-5), testthat (>=\n3.0.0), knitr (>= 1.6), markdown, rmarkdown, ggplot2, reactlog\n(>= 1.0.0), magrittr, yaml, future, dygraphs, ragg, showtext,\nsass"
shinyjs "htmltools (>= 0.2.9), knitr (>= 1.7), rmarkdown, shinyAce,\nshinydisconnect, testthat (>= 0.9.1)"
shinythemes NA
siggenes "affy, annotate, genefilter, KernSmooth"
snow "rlecuyer"
snpStats "hexbin"
solrium "testthat, knitr, rmarkdown"
sourcetools "testthat"
sp "RColorBrewer, gstat, deldir, knitr, rmarkdown, sf, terra,\nraster"
SparseArray "DelayedArray, testthat, knitr, rmarkdown, BiocStyle"
SparseM "knitr"
spData "foreign, sf (>= 0.9-1), spDataLarge (>= 0.4.0), spdep,\nspatialreg"
spdep "spatialreg (>= 1.2-1), Matrix, parallel, dbscan,\nRColorBrewer, lattice, xtable, foreign, igraph, RSpectra,\nknitr, classInt, tmap, spam, ggplot2, rmarkdown, tinytest,\nrgeoda (>= 0.0.11.1), mipfp, Guerry, codingMatrices"
splancs NA
SQUAREM "setRNG"
SSPA "BiocStyle, knitr, rmarkdown, genefilter, edgeR, DESeq"
statebins "viridis, RColorBrewer, covr, tinytest"
statmod "MASS, tweedie"
stringfish "qs, knitr, rmarkdown, usethis, dplyr, stringr, rlang"
stringi NA
stringr "covr, dplyr, gt, htmltools, htmlwidgets, knitr, rmarkdown,\ntestthat (>= 3.0.0), tibble"
styler "data.tree (>= 0.1.6), digest, here, knitr, prettycode,\nrmarkdown, roxygen2, rstudioapi (>= 0.7), tibble (>= 1.4.2),\ntestthat (>= 3.0.0)"
SummarizedExperiment "HDF5Array (>= 1.7.5), annotate, AnnotationDbi, hgu95av2.db,\nGenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, jsonlite,\nrhdf5, airway (>= 1.15.1), BiocStyle, knitr, rmarkdown, RUnit,\ntestthat, digest"
SuppDists "RcppZiggurat"
survival NA
sva "pamr, bladderbatch, BiocStyle, zebrafishRNASeq, testthat"
svglite "covr, fontquiver (>= 0.2.0), htmltools, knitr, rmarkdown,\ntestthat (>= 3.0.0), xml2 (>= 1.0.0)"
swirl "stringi"
sys "unix (>= 1.4), spelling, testthat"
systemfonts "covr, farver, graphics, knitr, rmarkdown, testthat (>= 2.1.0)"
taxize "testthat, vegan, vcr"
taxizedb "testthat"
terra "parallel, tinytest, ncdf4, sf (>= 0.9-8), deldir, XML,\nleaflet (>= 2.2.1), htmlwidgets"
testthat "covr, curl (>= 0.9.5), diffviewer (>= 0.1.0), knitr,\nrmarkdown, rstudioapi, S7, shiny, usethis, vctrs (>= 0.1.0),\nxml2"
textshaping "covr, knitr, rmarkdown"
TH.data "trtf, tram, rms, coin, ATR, multcomp, gridExtra, vcd,\ncolorspace, lattice, knitr"
tibble "bench, bit64, blob, brio, callr, cli, covr, crayon (>=\n1.3.4), DiagrammeR, dplyr, evaluate, formattable, ggplot2,\nhere, hms, htmltools, knitr, lubridate, mockr, nycflights13,\npkgbuild, pkgload, purrr, rmarkdown, stringi, testthat (>=\n3.0.2), tidyr, withr"
tidygraph "ape, covr, data.tree, graph, influenceR, methods, netrankr,\nNetSwan, network, seriation, testthat (>= 3.0.0)"
tidyr "covr, data.table, knitr, readr, repurrrsive (>= 1.1.0),\nrmarkdown, testthat (>= 3.0.0)"
tidyselect "covr, crayon, dplyr, knitr, magrittr, rmarkdown, stringr,\ntestthat (>= 3.1.1), tibble (>= 2.1.3)"
tidytree "knitr, rmarkdown, prettydoc, testthat, utils"
tidyverse "covr (>= 3.6.1), feather (>= 0.3.5), glue (>= 1.6.2), mockr\n(>= 0.2.0), knitr (>= 1.41), rmarkdown (>= 2.20), testthat (>=\n3.1.6)"
timechange "testthat (>= 0.7.1.99), knitr"
timeDate "RUnit"
tinytex "testit, rstudioapi"
treeio "Biostrings, ggplot2, ggtree, igraph, knitr, rmarkdown,\nphangorn, prettydoc, testthat, tidyr, vroom, xml2, yaml, purrr,\ncli"
treemap "knitr, markdown"
triebeard "knitr, rmarkdown, testthat"
tseries NA
TTR "RUnit"
tweenr "testthat, covr"
tzdb "covr, testthat (>= 3.0.0)"
units "NISTunits, measurements, xml2, magrittr, pillar (>= 1.3.0),\ndplyr (>= 1.0.0), vctrs (>= 0.3.1), ggplot2 (> 3.2.1), testthat\n(>= 3.0.0), vdiffr, knitr, rvest, rmarkdown"
urca NA
urlchecker "covr"
urltools "testthat, knitr"
usethis "covr, knitr, magick, pkgload (>= 1.3.2.1), rmarkdown,\nroxygen2 (>= 7.1.2), spelling (>= 1.2), styler (>= 1.2.0),\ntestthat (>= 3.1.8)"
UsingR "zoo, ggplot2, vcd, lubridate, aplpack"
utf8 "cli, covr, knitr, rlang, rmarkdown, testthat (>= 3.0.0),\nwithr"
uuid NA
vcfR "adegenet, ggplot2, knitr, poppr, reshape2, rmarkdown, scales,\ntestthat, tidyr"
vctrs "bit64, covr, crayon, dplyr (>= 0.8.5), generics, knitr,\npillar (>= 1.4.4), pkgdown (>= 2.0.1), rmarkdown, testthat (>=\n3.0.0), tibble (>= 3.1.3), waldo (>= 0.2.0), withr, xml2,\nzeallot"
vegan "parallel, knitr, markdown"
venn "QCA (>= 3.9), ggplot2, ggpolypath"
VennDiagram "testthat"
VGAM "VGAMextra, MASS, mgcv"
viridis "hexbin (>= 1.27.0), scales, MASS, knitr, dichromat,\ncolorspace, httr, mapproj, vdiffr, svglite (>= 1.2.0),\ntestthat, covr, rmarkdown, maps, terra"
viridisLite "hexbin (>= 1.27.0), ggplot2 (>= 1.0.1), testthat, covr"
vroom "archive, bench (>= 1.1.0), covr, curl, dplyr, forcats, fs,\nggplot2, knitr, patchwork, prettyunits, purrr, rmarkdown,\nrstudioapi, scales, spelling, testthat (>= 2.1.0), tidyr,\nutils, waldo, xml2"
vsn "affydata, hgu95av2cdf, BiocStyle, knitr, rmarkdown, dplyr,\ntestthat"
waldo "bit64, R6, S7, testthat (>= 3.0.0), withr, xml2"
webchem "testthat, rcdk, covr, robotstxt, knitr, rmarkdown,\nplot.matrix, usethis, vcr"
websocket "httpuv, testthat, knitr, rmarkdown"
whisker "markdown"
WikidataQueryServiceR "testthat (>= 2.3.0), lintr (>= 2.0.1)"
WikidataR "markdown, testthat, tidyverse, knitr, pageviews"
WikipediR "testthat, knitr, WikidataR, pageviews"
wikitaxa "testthat, knitr, rmarkdown, vcr"
withr "callr, DBI, knitr, methods, rlang, rmarkdown (>= 2.12),\nRSQLite, testthat (>= 3.0.0)"
wk "testthat (>= 3.0.0), vctrs (>= 0.3.0), sf, tibble, readr"
worrms "roxygen2 (>= 7.1.0), knitr, rmarkdown, testthat, vcr (>=\n0.2.0)"
xfun "testit, parallel, codetools, methods, rstudioapi, tinytex (>=\n0.30), mime, litedown (>= 0.6), commonmark, knitr (>= 1.50),\nremotes, pak, curl, xml2, jsonlite, magick, yaml, data.table,\nqs"
XML "bitops, RCurl"
xml2 "covr, curl, httr, knitr, magrittr, mockery, rmarkdown,\ntestthat (>= 3.2.0), xslt"
xmlparsedata "covr, testthat, xml2"
xopen "ps, testthat (>= 3.0.0)"
xtable "knitr, plm, zoo, survival"
xts "timeSeries, timeDate, tseries, chron, tinytest"
XVector "Biostrings, drosophila2probe, RUnit"
yaml "RUnit"
yulab.utils "httr2, jsonlite, openssl, rappdirs"
zip "covr, processx, R6, testthat, withr"
zlibbioc "BiocStyle, knitr"
zoo "AER, coda, chron, ggplot2 (>= 3.0.0), mondate, scales,\nstinepack, strucchange, timeDate, timeSeries, tinyplot, tis,\ntseries, xts"
base "methods"
boot "MASS, survival"
class NA
cluster "MASS, Matrix"
codetools NA
compiler NA
datasets NA
foreign NA
graphics NA
grDevices "KernSmooth"
grid NA
KernSmooth "MASS, carData"
lattice "KernSmooth, MASS, latticeExtra, colorspace"
MASS "lattice, nlme, nnet, survival"
Matrix "MASS, datasets, sfsmisc, tools"
methods "codetools"
mgcv "parallel, survival, MASS"
nlme "Hmisc, MASS, SASmixed"
nnet "MASS"
parallel "methods"
rpart "survival"
spatial "MASS"
splines "Matrix, methods"
stats "MASS, Matrix, SuppDists, methods, stats4"
stats4 NA
survival NA
tcltk NA
tools "codetools, methods, xml2, curl, commonmark, knitr, xfun,\nmathjaxr, V8"
translations NA
utils "methods, xml2, commonmark, knitr"
Enhances
abind NA
ade4 NA
adegenet NA
adegraphics NA
adephylo NA
adespatial NA
admisc NA
affy NA
affyio NA
annotate NA
AnnotationDbi NA
ape NA
aplot NA
ash NA
AsioHeaders NA
askpass NA
assertthat NA
backports NA
base64enc "png"
BH NA
bigassertr NA
bigparallelr NA
bigstatsr NA
Biobase NA
BiocFileCache NA
BiocGenerics NA
BiocIO NA
BiocManager NA
BiocParallel "Rmpi"
BiocStyle NA
BiocVersion NA
biomaRt NA
biostat NA
Biostrings "Rmpi"
bit NA
bit64 NA
bitops NA
bladderbatch NA
blob NA
bookdown NA
boot NA
brew NA
brio NA
broom NA
bslib NA
cachem NA
Cairo "FastRWeb"
callr NA
car NA
carData NA
caret NA
caTools NA
cellranger NA
checkmate NA
classInt NA
cli NA
clipr NA
clock NA
clue "RWeka, ape, cba, cclust, flexclust, flexmix, kernlab, mclust,\nmovMF, modeltools"
cluster "mvoutlier, fpc, ellipse, sfsmisc"
clusterProfiler NA
codetools NA
coin NA
collections NA
colorspace NA
colourpicker NA
commonmark NA
conflicted NA
contrast NA
corpcor NA
corrplot NA
covr NA
cowplot NA
cpp11 NA
crayon NA
credentials NA
crmn NA
crosstalk NA
crul NA
curl NA
CustomSelection NA
cyclocomp NA
data.table NA
data.tree "igraph"
DBI NA
dbplyr NA
DelayedArray NA
deldir NA
dendextend "ggdendro, dendroextras, Hmisc, data.table, rpart, WGCNA,\nmoduleColor, distory, phangorn, zoo"
Deriv NA
desc NA
DescTools NA
DESeq2 NA
devtools NA
diagram NA
diffobj NA
digest NA
doBy NA
doParallel "compiler"
DOSE NA
downlit NA
downloader NA
dplyr NA
dslabs NA
DT NA
dtplyr NA
dunn.test NA
e1071 NA
earth NA
edgeR NA
ellipse NA
ellipsis NA
embroidr NA
emmeans "CARBayes, coxme, gee, geepack, MCMCglmm, MCMCpack, mice,\nnnet, pscl, rstanarm, sommer, survival"
enrichplot NA
entropy NA
estimability NA
evaluate NA
Exact NA
expm NA
expsmooth NA
extrafont NA
extrafontdb NA
fansi NA
farver NA
fastmap NA
fastmatch NA
feather NA
ff NA
fgsea NA
filelock NA
fitdistrplus NA
flock NA
fma NA
fontawesome NA
forcats NA
foreach NA
forecast NA
forestplot NA
formatR NA
Formula NA
fpp2 NA
fracdiff NA
fs NA
FSA NA
furrr NA
futile.logger NA
futile.options NA
future NA
future.apply NA
gapminder NA
gargle NA
gaston NA
gee NA
geepack NA
genefilter NA
genepop NA
generics NA
GenomeInfoDb NA
GenomeInfoDbData NA
GenomicAlignments NA
GenomicFeatures NA
GenomicRanges NA
genstats NA
geodata NA
gert NA
GetoptLong NA
ggalt NA
ggExtra NA
ggforce NA
ggfortify NA
ggfun NA
ggmsa NA
ggnewscale NA
ggplot2 "sp"
ggplotify NA
ggpolypath NA
ggpubr NA
ggraph NA
ggrepel NA
ggsci NA
ggsignif NA
ggspatial NA
ggtext NA
ggtranscript NA
ggtree NA
ggvenn NA
gh NA
gitcreds NA
glasso NA
gld NA
GlobalAncova NA
GlobalOptions NA
globals NA
globaltest NA
glue NA
Gmisc NA
GO.db NA
googledrive NA
googlesheets4 NA
GOSemSim NA
gower NA
GPArotation NA
gplots NA
graph "Rgraphviz"
graphlayouts NA
gridBase NA
gridExtra NA
gridGraphics NA
gridtext NA
GSEABase NA
gson NA
gtable NA
gtools NA
hardhat NA
haven NA
HDO.db NA
hierfstat NA
highr NA
HistData NA
Hmisc NA
hms NA
hoardr NA
htmlTable NA
htmltools "knitr"
htmlwidgets "shiny (>= 1.1)"
httpcode NA
httpuv NA
httr NA
httr2 NA
ids NA
igraph "graph"
impute NA
ini NA
interp "RcppEigen"
ipred NA
IRanges NA
isoband NA
iterators NA
jpeg NA
jquerylib NA
jsonlite NA
kableExtra NA
KEGGgraph NA
KEGGREST NA
KernSmooth NA
knitr NA
labeling NA
lambda.r NA
languageserver NA
later NA
lattice "chron, zoo"
latticeExtra NA
lava NA
lazyeval NA
libcoin NA
lifecycle NA
limma NA
lintr "data.table"
listenv NA
lme4 NA
lmom NA
lmtest NA
locfit NA
lsmeans NA
lubridate "chron, data.table, timeDate, tis, zoo"
magrittr NA
MALDIquant NA
maps NA
markdown NA
MatrixGenerics NA
MatrixModels NA
matrixStats NA
mclust NA
memoise NA
memuse NA
MetaboAnalystR NA
microbenchmark NA
mime NA
miniUI NA
minpack.lm NA
minqa NA
mmod NA
mnormt NA
mockr NA
ModelMetrics NA
modelr NA
modeltools NA
msa NA
MsCoreUtils "HDF5Array"
MSnbase NA
mtbls2 NA
multcomp NA
multcompView NA
multtest NA
munsell NA
mvtnorm NA
mzID NA
mzR NA
natserv NA
ncdf4 NA
networkD3 "knitr, shiny"
nloptr NA
nortest NA
numDeriv NA
onekp NA
openssl NA
openxlsx NA
OptiLCMS "XML"
pagedown NA
pander NA
pandoc NA
parallelly NA
patchwork NA
pbapply NA
pbkrtest NA
pcaMethods NA
pegas NA
permute NA
phangorn NA
phylobase NA
pillar NA
pinfsc50 NA
pixmap NA
pkgbuild NA
pkgconfig NA
pkgdown NA
pkgload NA
plogr NA
plotly NA
plotmo NA
plotrix NA
pls NA
plyr NA
png NA
polspline NA
polyclip NA
polynom NA
polysat NA
PopGenHelpR NA
poppr NA
posterdown NA
poweRlaw NA
pracma NA
praise NA
preprocessCore NA
prettyunits NA
pROC NA
processx NA
prodlim NA
profvis NA
progress NA
progressr NA
proj4 NA
promises NA
ProtGenerics NA
proxy NA
ps NA
psych NA
purrr NA
qs NA
quadprog NA
quantmod NA
quantreg NA
qvalue NA
R.cache NA
R.methodsS3 NA
R.oo NA
R.utils NA
R4RNA NA
R6 NA
rafalib NA
ragg NA
randomForest NA
RApiSerialize NA
rappdirs NA
ratelimitr NA
RBGL NA
rbibutils NA
rcmdcheck NA
RColorBrewer NA
rcompanion NA
Rcpp NA
RcppArmadillo NA
RcppEigen NA
RcppParallel NA
RcppProgress NA
RCurl NA
Rdpack NA
readr NA
readxl NA
recipes NA
reformulas NA
rematch NA
rematch2 NA
remotes NA
rentrez NA
renv NA
reprex NA
reshape2 NA
restfulr NA
rex NA
rgl "waldo"
Rgraphviz NA
Rhdf5lib NA
RhpcBLASctl NA
Rhtslib NA
ritis NA
rjson NA
RJSONIO NA
rlang "winch"
rmarkdown NA
rmio NA
rms NA
rncl NA
RNeXML NA
rootSolve NA
rosm NA
rotl NA
roxygen2 NA
rprojroot NA
rredlist NA
Rsamtools NA
Rserve NA
RSkittleBrewer NA
rsm NA
RSpectra NA
RSQLite NA
rstatix NA
rstudioapi NA
rtracklayer NA
Rttf2pt1 NA
rversions NA
rvest NA
s2 NA
S4Arrays NA
S4Vectors NA
sandwich NA
sass NA
scales NA
scatterpie NA
scrime NA
scriptName NA
segmented NA
selectr NA
seqinr NA
seqmagick NA
servr NA
sessioninfo NA
sf NA
shadowtext NA
shape NA
shiny NA
shinyjs NA
shinythemes NA
siggenes NA
snow "Rmpi"
snpStats NA
solrium NA
sourcetools NA
sp NA
SparseArray NA
SparseM NA
spData NA
spdep NA
splancs NA
SQUAREM NA
SSPA NA
statebins NA
statmod NA
stringfish NA
stringi NA
stringr NA
styler NA
SummarizedExperiment NA
SuppDists NA
survival NA
sva NA
svglite NA
swirl NA
sys NA
systemfonts NA
taxize NA
taxizedb NA
terra NA
testthat NA
textshaping NA
TH.data NA
tibble NA
tidygraph NA
tidyr NA
tidyselect NA
tidytree NA
tidyverse NA
timechange NA
timeDate NA
tinytex NA
treeio NA
treemap NA
triebeard NA
tseries NA
TTR "quantmod"
tweenr NA
tzdb NA
units NA
urca NA
urlchecker NA
urltools NA
usethis NA
UsingR NA
utf8 NA
uuid NA
vcfR NA
vctrs NA
vegan NA
venn NA
VennDiagram NA
VGAM "VGAMdata"
viridis NA
viridisLite NA
vroom NA
vsn NA
waldo NA
webchem NA
websocket NA
whisker NA
WikidataQueryServiceR NA
WikidataR NA
WikipediR NA
wikitaxa NA
withr NA
wk NA
worrms NA
xfun NA
XML NA
xml2 NA
xmlparsedata NA
xopen NA
xtable NA
xts NA
XVector NA
yaml NA
yulab.utils NA
zip NA
zlibbioc NA
zoo NA
base NA
boot NA
class NA
cluster "mvoutlier, fpc, ellipse, sfsmisc"
codetools NA
compiler NA
datasets NA
foreign NA
graphics NA
grDevices NA
grid NA
KernSmooth NA
lattice "chron, zoo"
MASS NA
Matrix "SparseM, graph"
methods NA
mgcv NA
nlme NA
nnet NA
parallel "snow, Rmpi"
rpart NA
spatial NA
splines NA
stats NA
stats4 NA
survival NA
tcltk NA
tools NA
translations NA
utils NA
License License_is_FOSS
abind "MIT + file LICENSE" NA
ade4 "GPL (>= 2)" NA
adegenet "GPL (>= 2)" NA
adegraphics "GPL (>= 2)" NA
adephylo "GPL (>= 2)" NA
adespatial "GPL (>= 2)" NA
admisc "GPL (>= 3)" NA
affy "LGPL (>= 2.0)" NA
affyio "LGPL (>= 2)" NA
annotate "Artistic-2.0" NA
AnnotationDbi "Artistic-2.0" NA
ape "GPL-2 | GPL-3" NA
aplot "Artistic-2.0" NA
ash "GPL (>= 2)" NA
AsioHeaders "BSL-1.0" NA
askpass "MIT + file LICENSE" NA
assertthat "GPL-3" NA
backports "GPL-2 | GPL-3" NA
base64enc "GPL-2 | GPL-3" NA
BH "BSL-1.0" NA
bigassertr "GPL-3" NA
bigparallelr "GPL-3" NA
bigstatsr "GPL-3" NA
Biobase "Artistic-2.0" NA
BiocFileCache "Artistic-2.0" NA
BiocGenerics "Artistic-2.0" NA
BiocIO "Artistic-2.0" NA
BiocManager "Artistic-2.0" NA
BiocParallel "GPL-2 | GPL-3" NA
BiocStyle "Artistic-2.0" NA
BiocVersion "Artistic-2.0" NA
biomaRt "Artistic-2.0" NA
biostat "GPL-3" NA
Biostrings "Artistic-2.0" NA
bit "GPL-2 | GPL-3" NA
bit64 "GPL-2 | GPL-3" NA
bitops "GPL (>= 2)" NA
bladderbatch "Artistic-2.0" NA
blob "MIT + file LICENSE" NA
bookdown "GPL-3" NA
boot "Unlimited" NA
brew "GPL (>= 2)" NA
brio "MIT + file LICENSE" NA
broom "MIT + file LICENSE" NA
bslib "MIT + file LICENSE" NA
cachem "MIT + file LICENSE" NA
Cairo "GPL-2 | GPL-3" NA
callr "MIT + file LICENSE" NA
car "GPL (>= 2)" NA
carData "GPL (>= 2)" NA
caret "GPL (>= 2)" NA
caTools "GPL-3" NA
cellranger "MIT + file LICENSE" NA
checkmate "BSD_3_clause + file LICENSE" NA
classInt "GPL (>= 2)" NA
cli "MIT + file LICENSE" NA
clipr "GPL-3" NA
clock "MIT + file LICENSE" NA
clue "GPL-2" NA
cluster "GPL (>= 2)" NA
clusterProfiler "Artistic-2.0" NA
codetools "GPL" NA
coin "GPL-2" NA
collections "MIT + file LICENSE" NA
colorspace "BSD_3_clause + file LICENSE" NA
colourpicker "MIT + file LICENSE" NA
commonmark "BSD_2_clause + file LICENSE" NA
conflicted "MIT + file LICENSE" NA
contrast "GPL-2" NA
corpcor "GPL (>= 3)" NA
corrplot "MIT + file LICENSE" NA
covr "MIT + file LICENSE" NA
cowplot "GPL-2" NA
cpp11 "MIT + file LICENSE" NA
crayon "MIT + file LICENSE" NA
credentials "MIT + file LICENSE" NA
crmn "GPL (>= 3)" NA
crosstalk "MIT + file LICENSE" NA
crul "MIT + file LICENSE" NA
curl "MIT + file LICENSE" NA
CustomSelection "none" NA
cyclocomp "MIT + file LICENSE" NA
data.table "MPL-2.0 | file LICENSE" NA
data.tree "GPL (>= 2)" NA
DBI "LGPL (>= 2.1)" NA
dbplyr "MIT + file LICENSE" NA
DelayedArray "Artistic-2.0" NA
deldir "GPL (>= 2)" NA
dendextend "GPL-2 | GPL-3" NA
Deriv "GPL (>= 3)" NA
desc "MIT + file LICENSE" NA
DescTools "GPL (>= 2)" NA
DESeq2 "LGPL (>= 3)" NA
devtools "MIT + file LICENSE" NA
diagram "GPL (>= 2)" NA
diffobj "GPL-2 | GPL-3" NA
digest "GPL (>= 2)" NA
doBy "GPL (>= 2)" NA
doParallel "GPL-2" NA
DOSE "Artistic-2.0" NA
downlit "MIT + file LICENSE" NA
downloader "GPL-2" NA
dplyr "MIT + file LICENSE" NA
dslabs "Artistic-2.0" NA
DT "GPL-3 | file LICENSE" NA
dtplyr "MIT + file LICENSE" NA
dunn.test "GPL-2" NA
e1071 "GPL-2 | GPL-3" NA
earth "GPL-3" NA
edgeR "GPL (>=2)" NA
ellipse "GPL (>= 2)" NA
ellipsis "MIT + file LICENSE" NA
embroidr "MIT + file LICENSE" NA
emmeans "GPL-2 | GPL-3" NA
enrichplot "Artistic-2.0" NA
entropy "GPL (>= 3)" NA
estimability "GPL (>= 3)" NA
evaluate "MIT + file LICENSE" NA
Exact "GPL-2" NA
expm "GPL (>= 2)" NA
expsmooth "GPL (>= 2)" NA
extrafont "GPL-2" NA
extrafontdb "GPL-2" NA
fansi "GPL-2 | GPL-3" NA
farver "MIT + file LICENSE" NA
fastmap "MIT + file LICENSE" NA
fastmatch "GPL-2" NA
feather "Apache License 2.0" NA
ff "GPL-2 | GPL-3 | file LICENSE" NA
fgsea "MIT + file LICENCE" NA
filelock "MIT + file LICENSE" NA
fitdistrplus "GPL (>= 2)" NA
flock "Apache License 2.0" NA
fma "GPL-3" NA
fontawesome "MIT + file LICENSE" NA
forcats "MIT + file LICENSE" NA
foreach "Apache License (== 2.0)" NA
forecast "GPL-3" NA
forestplot "GPL-2" NA
formatR "GPL" NA
Formula "GPL-2 | GPL-3" NA
fpp2 "GPL-3" NA
fracdiff "GPL (>= 2)" NA
fs "MIT + file LICENSE" NA
FSA "GPL (>= 2)" NA
furrr "MIT + file LICENSE" NA
futile.logger "LGPL-3" NA
futile.options "LGPL-3" NA
future "LGPL (>= 2.1)" NA
future.apply "GPL (>= 2)" NA
gapminder "CC0" NA
gargle "MIT + file LICENSE" NA
gaston "GPL-3" NA
gee "GPL-2" NA
geepack "GPL (>= 3)" NA
genefilter "Artistic-2.0" NA
genepop "CeCILL-2" NA
generics "MIT + file LICENSE" NA
GenomeInfoDb "Artistic-2.0" NA
GenomeInfoDbData "Artistic-2.0" NA
GenomicAlignments "Artistic-2.0" NA
GenomicFeatures "Artistic-2.0" NA
GenomicRanges "Artistic-2.0" NA
genstats "MIT + file LICENSE" NA
geodata "GPL (>= 3)" NA
gert "MIT + file LICENSE" NA
GetoptLong "MIT + file LICENSE" NA
ggalt "AGPL + file LICENSE" NA
ggExtra "MIT + file LICENSE" NA
ggforce "MIT + file LICENSE" NA
ggfortify "MIT + file LICENSE" NA
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Built
abind "4.3.0"
ade4 "4.3.3"
adegenet "4.3.3"
adegraphics "4.3.3"
adephylo "4.3.3"
adespatial "4.3.3"
admisc "4.3.3"
affy "4.3.1"
affyio "4.3.1"
annotate "4.3.1"
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aplot "4.3.3"
ash "4.3.1"
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askpass "4.3.3"
assertthat "4.3.3"
backports "4.3.3"
base64enc "4.3.1"
BH "4.3.3"
bigassertr "4.3.3"
bigparallelr "4.3.3"
bigstatsr "4.3.3"
Biobase "4.3.1"
BiocFileCache "4.3.3"
BiocGenerics "4.3.1"
BiocIO "4.3.1"
BiocManager "4.3.0"
BiocParallel "4.3.1"
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BiocVersion "4.3.2"
biomaRt "4.3.2"
biostat "4.3.3"
Biostrings "4.3.3"
bit "4.3.3"
bit64 "4.3.3"
bitops "4.3.3"
bladderbatch "4.3.3"
blob "4.3.3"
bookdown "4.3.3"
boot "4.3.3"
brew "4.3.3"
brio "4.3.3"
broom "4.3.3"
bslib "4.3.3"
cachem "4.3.3"
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callr "4.3.3"
car "4.3.3"
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caret "4.3.3"
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cli "4.3.3"
clipr "4.3.3"
clock "4.3.3"
clue "4.3.3"
cluster "4.3.3"
clusterProfiler "4.3.3"
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collections "4.3.3"
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colourpicker "4.3.3"
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covr "4.3.3"
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cpp11 "4.3.3"
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gower "4.3.3"
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gplots "4.3.3"
graph "4.3.1"
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highr "4.3.3"
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Hmisc "4.3.3"
hms "4.3.3"
hoardr "4.3.3"
htmlTable "4.3.3"
htmltools "4.3.3"
htmlwidgets "4.3.3"
httpcode "4.3.3"
httpuv "4.3.3"
httr "4.3.3"
httr2 "4.3.3"
ids "4.3.3"
igraph "4.3.3"
impute "4.3.1"
ini "4.3.3"
interp "4.3.3"
ipred "4.3.3"
IRanges "4.3.1"
isoband "4.3.3"
iterators "4.3.3"
jpeg "4.3.1"
jquerylib "4.3.3"
jsonlite "4.3.3"
kableExtra "4.3.3"
KEGGgraph "4.3.1"
KEGGREST "4.3.1"
KernSmooth "4.3.3"
knitr "4.3.3"
labeling "4.3.1"
lambda.r "4.3.3"
languageserver "4.3.3"
later "4.3.3"
lattice "4.3.3"
latticeExtra "4.3.3"
lava "4.3.3"
lazyeval "4.3.3"
libcoin "4.3.3"
lifecycle "4.3.3"
limma "4.3.1"
lintr "4.3.3"
listenv "4.3.3"
lme4 "4.3.3"
lmom "4.3.3"
lmtest "4.3.3"
locfit "4.3.3"
lsmeans "4.3.3"
lubridate "4.3.3"
magrittr "4.3.3"
MALDIquant "4.3.3"
maps "4.3.3"
markdown "4.3.3"
MatrixGenerics "4.3.1"
MatrixModels "4.3.3"
matrixStats "4.3.3"
mclust "4.3.3"
memoise "4.3.3"
memuse "4.3.1"
MetaboAnalystR "4.3.3"
microbenchmark "4.3.0"
mime "4.3.1"
miniUI "4.3.3"
minpack.lm "4.3.3"
minqa "4.3.3"
mmod "4.3.3"
mnormt "4.3.1"
mockr "4.3.3"
ModelMetrics "4.3.3"
modelr "4.3.3"
modeltools "4.3.1"
msa "4.3.1"
MsCoreUtils "4.3.2"
MSnbase "4.3.2"
mtbls2 "4.3.3"
multcomp "4.3.3"
multcompView "4.3.3"
multtest "4.3.1"
munsell "4.3.3"
mvtnorm "4.3.3"
mzID "4.3.1"
mzR "4.3.1"
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ncdf4 "4.3.3"
networkD3 "4.3.3"
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pbkrtest "4.3.3"
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pegas "4.3.3"
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phangorn "4.3.3"
phylobase "4.3.3"
pillar "4.3.3"
pinfsc50 "4.3.2"
pixmap "4.3.3"
pkgbuild "4.3.3"
pkgconfig "4.3.3"
pkgdown "4.3.3"
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plogr "4.3.3"
plotly "4.3.3"
plotmo "4.3.0"
plotrix "4.3.2"
pls "4.3.3"
plyr "4.3.3"
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polspline "4.3.3"
polyclip "4.3.3"
polynom "4.3.3"
polysat "4.3.3"
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poppr "4.3.3"
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poweRlaw "4.3.3"
pracma "4.3.3"
praise "4.3.3"
preprocessCore "4.3.1"
prettyunits "4.3.3"
pROC "4.3.3"
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profvis "4.3.3"
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progressr "4.3.3"
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promises "4.3.3"
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proxy "4.3.3"
ps "4.3.3"
psych "4.3.3"
purrr "4.3.3"
qs "4.3.3"
quadprog "4.3.1"
quantmod "4.3.3"
quantreg "4.3.3"
qvalue "4.3.1"
R.cache "4.3.3"
R.methodsS3 "4.3.3"
R.oo "4.3.3"
R.utils "4.3.3"
R4RNA "4.3.1"
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stringr "4.3.3"
styler "4.3.3"
SummarizedExperiment "4.3.1"
SuppDists "4.3.3"
survival "4.3.3"
sva "4.3.1"
svglite "4.3.0"
swirl "4.3.3"
sys "4.3.3"
systemfonts "4.3.3"
taxize "4.3.3"
taxizedb "4.3.3"
terra "4.3.3"
testthat "4.3.3"
textshaping "4.3.3"
TH.data "4.3.3"
tibble "4.3.3"
tidygraph "4.3.3"
tidyr "4.3.3"
tidyselect "4.3.3"
tidytree "4.3.3"
tidyverse "4.3.3"
timechange "4.3.3"
timeDate "4.3.3"
tinytex "4.3.3"
treeio "4.3.1"
treemap "4.3.3"
triebeard "4.3.3"
tseries "4.3.3"
TTR "4.3.3"
tweenr "4.3.3"
tzdb "4.3.3"
units "4.3.3"
urca "4.3.3"
urlchecker "4.3.3"
urltools "4.3.3"
usethis "4.3.3"
UsingR "4.3.3"
utf8 "4.3.3"
uuid "4.3.3"
vcfR "4.3.3"
vctrs "4.3.3"
vegan "4.3.3"
venn "4.3.3"
VennDiagram "4.3.3"
VGAM "4.3.3"
viridis "4.3.0"
viridisLite "4.3.3"
vroom "4.3.3"
vsn "4.3.1"
waldo "4.3.3"
webchem "4.3.3"
websocket "4.3.3"
whisker "4.3.3"
WikidataQueryServiceR "4.3.3"
WikidataR "4.3.3"
WikipediR "4.3.3"
wikitaxa "4.3.3"
withr "4.3.3"
wk "4.3.3"
worrms "4.3.3"
xfun "4.3.3"
XML "4.3.3"
xml2 "4.3.3"
xmlparsedata "4.3.3"
xopen "4.3.3"
xtable "4.3.3"
xts "4.3.3"
XVector "4.3.1"
yaml "4.3.3"
yulab.utils "4.3.3"
zip "4.3.3"
zlibbioc "4.3.3"
zoo "4.3.3"
base "4.3.3"
boot "4.3.3"
class "4.3.3"
cluster "4.3.3"
codetools "4.3.3"
compiler "4.3.3"
datasets "4.3.3"
foreign "4.3.3"
graphics "4.3.3"
grDevices "4.3.3"
grid "4.3.3"
KernSmooth "4.3.3"
lattice "4.3.3"
MASS "4.3.3"
Matrix "4.3.3"
methods "4.3.3"
mgcv "4.3.3"
nlme "4.3.3"
nnet "4.3.3"
parallel "4.3.3"
rpart "4.3.3"
spatial "4.3.3"
splines "4.3.3"
stats "4.3.3"
stats4 "4.3.3"
survival "4.3.3"
tcltk "4.3.3"
tools "4.3.3"
translations "4.3.3"
utils "4.3.3"